Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq12087 104 2e-17 seq4594 102 7e-17 >seq12087 Length=1588 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || ||||| | |||||||| || ||||| || | ||| || ||| || ||| | Sbjct 233 CGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCG 292 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || || ||||||| |||| || ||||| || ||||||||||| ||| Sbjct 293 TCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTTG 352 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || |||||||||||| | | | ||||| | ||||| |||| |||||| Sbjct 353 TCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATG 412 Query 94973 GTTTTTCCAGTAAGA 94987 || || || |||||| Sbjct 413 GTCTTGCCGGTAAGA 427 >seq4594 Length=2528 Score = 102 bits (112), Expect = 7e-17 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 94754 GCTAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTA 94813 ||| ||| |||| ||| ||| || ||| || | | ||| | |||| || | || Sbjct 2155 GCTTACGTTTTTACAAAGATTTGCATTCCACCACGGAGTCGGAGAACCAGATGAAGGGTC 2214 Query 94814 GATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA---TCCTCCAGCTGTTTTCCG 94870 || || ||||| | ||| || || | || || || | || |||||||| || |||||| Sbjct 2215 GACTCTTTTTGGATGTTGTAGTC-CGCA-AGAGT-GCAACCGTCCTCCAGTTGCTTTCCG 2271 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 |||| || || | |||||| ||||| ||||||||||| ||||| | ||| || |||||| Sbjct 2272 GCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTTCGCCTTG 2331 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||| | | | ||||||| | ||||| || | |||| ||||| ||||| Sbjct 2332 ACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAAGATGATCGTTTTGCCAGT 2384 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||| |||| | || | ||||| || | || || |||||||| | Sbjct 1009 AAAAATCTGCATTCCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAAT 1068 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| |||| | || ||| | || |||||| || || ||||| ||||||||| | Sbjct 1069 GTTGTAATTGGCCAAAGT--TCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGC 1126 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || ||||| || || || ||||| || || | || || ||||||||| | | | ||| Sbjct 1127 TGTTGATCCGGTGGGATTCCTTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTG 1186 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 || | ||||| || | ||||||||||| ||||| Sbjct 1187 TCCGATGATTCGACCTCCAAAGTGATGGTTTTGCCAGT 1224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448166754362880