Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq9603 120 5e-23 seq10306 118 2e-22 seq19582 87.8 3e-13 seq1442 87.8 3e-13 seq9606 84.2 3e-12 seq20524 80.6 4e-11 >seq9603 Length=8546 Score = 120 bits (132), Expect = 5e-23 Identities = 105/128 (82%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||| | ||||| | || |||||||||||||| |||||||||||||| ||||| | Sbjct 2274 GTCATCGTAAGATCT-TGCGTGATAACATCCAAGGTATCACCAAGCCAGCCATCCGAAGA 2216 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || |||||||| || |||||||| ||| ||||||| || |||||||||||| ||| | | Sbjct 2215 CTTGCTCGTCGAGGAGGAGTCAAACGTATCTCTGGCCTGATCTATGAAGAGACTCGAGGT 2156 Query 16559 GTTTTGAA 16566 || |||| Sbjct 2155 GTACTGAA 2148 >seq10306 Length=14720 Score = 118 bits (130), Expect = 2e-22 Identities = 105/129 (81%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||| | ||||| | ||||| ||||||||||| |||||||| || |||||||||||| Sbjct 6239 GTCATCGTAAGATCT-TGCGAGACAACATCCAAGGTATCACCAAACCGGCTATCCGTCGT 6181 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || |||||||| || |||||||| ||| ||||||| ||| | || ||||| | |||| Sbjct 6180 CTTGCTCGTCGAGGAGGAGTCAAACGTATCTCTGGTTTGATTTACGAAGAAACCCGTGGA 6121 Query 16559 GTTTTGAAG 16567 ||| | ||| Sbjct 6120 GTTCTCAAG 6112 Score = 93.3 bits (102), Expect = 7e-15 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 16563 TGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAAC 16622 || ||||||||||| ||| ||| |||| || | || || ||||||||||| || | Sbjct 6010 TGTAGATCTTCCTCGAGAACGTCATCCGAGACTCGGTCACTTACACCGAGCACGCCAAGC 5951 Query 16623 GTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTT 16682 | ||||| ||||| ||| |||| ||||||| || | |||||||||||||||| | | Sbjct 5950 GCAAGACGGTCACTTCCTTGGACGTCGTCTACGCCCTTAAACGTCAAGGCCGTACCCTCT 5891 Query 16683 ATGGTTTTGGA 16693 | ||||| ||| Sbjct 5890 ACGGTTTCGGA 5880 >seq19582 Length=3598 Score = 87.8 bits (96), Expect = 3e-13 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||| |||||| |||||||||||||| || | | || |||||||| || |||||| Sbjct 2058 GATAACACCCAAGGCATCACCAAGCCAGCCATTTGAAGACTTGCTCGTCGAGGAGGAGTC 1999 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || ||| | ||||| || |||||||||||| Sbjct 1998 AAACGTATTTCTGGTCTGATCTATGAAGAGA 1968 >seq1442 Length=4048 Score = 87.8 bits (96), Expect = 3e-13 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||| | ||| |||||| || ||||||||||| ||||||||||| || || || | Sbjct 782 GTCATCGTAAGAT-TCTTCGTGACAACATCCAAGGTATCACCAAGCCCGCCATTCGAAGA 724 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 ||||||| || || || ||||||||| |||| || | |||| || |||| ||| | | Sbjct 723 TTGGCTCGACGAGGAGGTGTCAAGCGTATCTCCGGCCTTATCTACGAGGAGACTCGAGGT 664 Query 16559 GT 16560 || Sbjct 663 GT 662 >seq9606 Length=7075 Score = 84.2 bits (92), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | || |||||||||||||| |||||||||||||| || | | || |||| | Sbjct 1061 AGATCT-TGCGTGATAACATCCAAGGCATCACCAAGCCAGCCATTCAAAGACTTGCTCAT 1119 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || |||||||| | | | ||||| || |||||||||||| Sbjct 1120 TGAGGAGGAGTCAAACATATTTCTGGTCTGATCTATGAAGAGA 1162 >seq20524 Length=1124 Score = 80.6 bits (88), Expect = 4e-11 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 ||||| |||||||| || |||||||||||||| ||||| || || || || || || ||| Sbjct 190 CGAGACAACATCCAGGGTATCACCAAGCCAGCCATCCGCCGACTCGCCCGACGAGGAGGA 249 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || || || |||| |||||| | || || |||| Sbjct 250 GTTAAACGAATCTCAGGATTGATTTACGAGGAGA 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79054895070144