Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq10000 107 5e-18 >seq10000 Length=7706 Score = 107 bits (118), Expect = 5e-18 Identities = 246/370 (66%), Gaps = 8/370 (2%) Strand=Plus/Plus Query 364195 AAGTCCAACCAGCAGCACCTTGGTACAAT----TCAGCAGAGCAACCTATGTACCGAGAT 364250 || ||||| ||| || ||||||| || || ||| | |||||| ||||||||||| Sbjct 5103 AAATCCAATCAGAAGAACCTTGGAACCATCAAATCATC----CAACCTCTGTACCGAGAT 5158 Query 364251 TATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 ||| |||||| |||| || ||||| || || ||||| | || ||||| || | || Sbjct 5159 TATCGAATACTCCGCCCCTGACGAAGTCGCAGTTTGTAATTTGGCCTCGATTGCCTTACC 5218 Query 364311 GGCGTTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGC 364370 | | | | ||||| | | ||| ||| | ||| |||| || ||| | | | Sbjct 5219 AACTTATATCGTCGATGGCAAATACGACTTCCACAAACTTCATGAGGTCACCAAGGAAGT 5278 Query 364371 TACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCG 364430 || | |||||| | ||||||||| ||||| || || || || || || | Sbjct 5279 CACCTACAATCTGAATCGAATTATCGACATCAATTACTACCCGATCCCAGAGGCGAGGAA 5338 Query 364431 TTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 || || ||| | ||||| ||||||||| | || ||||| || || ||||||| ||| Sbjct 5339 GTCGAACATGAGACATCGTCCGATTGGTATCGGAGTACAAGGACTTGCTGACGCTTTCCA 5398 Query 364491 GATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGA 364550 || |||||| | |||| || || | | || | || |||| |||||||||| Sbjct 5399 AATCCTCAAGCTACCATTCGAGTCAGCAGCTGCGAAGGAACTGAATACTCAGATCTTTGA 5458 Query 364551 AACAATGTAT 364560 ||| ||||| Sbjct 5459 AACTCTGTAT 5468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302982743766656