Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq18586 140 2e-28 seq20366 98.7 7e-16 seq9847 98.7 7e-16 seq4594 89.7 3e-13 seq12084 86.0 4e-12 seq12085 84.2 1e-11 >seq18586 Length=582 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 110 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 51 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 50 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 16 >seq20366 Length=206 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| ||||||||||||||||||||| |||||||||||| | Sbjct 153 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTC 94 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||| Sbjct 93 ACCTATATTTAGCCTTA 77 >seq9847 Length=14430 Score = 98.7 bits (108), Expect = 7e-16 Identities = 83/101 (82%), Gaps = 11/101 (11%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCG------CTAGATAGTAGATAGGGG--GT---AA 25950 ||||| ||| |||||||||| ||||| ||||||||||||||||| || || Sbjct 4670 AAGCCTGTTGTCTTGGCTGTGATTTCGGTTTTGCTAGATAGTAGATAGGGACAGTGAGAA 4729 Query 25951 TCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| |||||||| |||||||||||||||||||||||||||| Sbjct 4730 TCTTGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 4770 >seq4594 Length=2528 Score = 89.7 bits (98), Expect = 3e-13 Identities = 104/139 (75%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||| | ||| | ||||||||||| ||| |||||||||||| ||||||| Sbjct 1018 CATT-CCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAAT 1076 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | |||| || | || || | ||| ||||| ||||| ||||| || |||||||| | Sbjct 1077 TGGCCAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCG 1136 Query 38206 AGGGGACGCCTTCTTTGTC 38224 |||| ||||| || || Sbjct 1137 GTGGGATTCCTTCCTTATC 1155 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| || ||| || ||||| ||||| || | | ||| |||| || Sbjct 1619 ACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCGTCCTCC 1678 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 | |||||| |||||||| |||| ||||||||||| | ||||| |||||| ||||| Sbjct 1679 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTC 1734 >seq12084 Length=2187 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/139 (74%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||| | ||| | |||| ||||||||| ||||||||| || ||||||| Sbjct 2031 CATT-CCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAAT 2089 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | || | || | || || | ||| ||||||||||| |||| || |||||||| | Sbjct 2090 CGGCCAGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCG 2149 Query 38206 AGGGGACGCCTTCTTTGTC 38224 |||| ||||| ||||| Sbjct 2150 GAGGGATTCCTTCCTTGTC 2168 >seq12085 Length=636 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| || ||| || ||||| ||||| || | | ||| |||| || Sbjct 245 ACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGACCGTCTTCC 304 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 |||||||| |||||||| ||||| ||||||||||| | ||||| ||||| || || Sbjct 305 AATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGGATTCCTTCCTTATC 360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334856543190848