Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq12085 132 4e-26 seq4594 132 4e-26 seq12084 131 1e-25 seq12087 111 1e-19 seq12086 111 1e-19 >seq12085 Length=636 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 |||||||| ||| ||||||| ||||||||| | | || || | || | ||||| Sbjct 429 ACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAACGTCAAAGCT 370 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||| ||||| || || || || |||||||||||||| || |||||||| ||| Sbjct 369 AAGATCCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTCTAATCTTTGCCGGTAAA 310 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || || || || || ||| | |||| ||||||||||| ||||| || ||| | ||| Sbjct 309 CAATTGGAAGACGGTCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCTTCAT 250 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || ||| | ||| | || ||||| Sbjct 249 TTGGTTCTCCGACTTCGAGGAGG 227 >seq4594 Length=2528 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 |||||||| ||| ||||||| ||||||||| | | || || | || || ||||| Sbjct 1803 ACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAATGTCAAAGCC 1744 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||||||||| || || || | |||||||||||| | || |||||||| ||| Sbjct 1743 AAGATCCAAGACAAGGAAGGCATCCCCACAGATCAACAACGTTTAATCTTTGCCGGTAAA 1684 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | ||||| ||| ||| | |||| ||||||||||| ||||| || ||| | ||| Sbjct 1683 CAACTGGAGGACGGCCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCTTCAT 1624 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || ||| | ||| | | ||||| Sbjct 1623 TTGGTTCTCCGACTCCAAGGAGG 1601 Score = 131 bits (144), Expect = 1e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| |||||||| || || |||||||| | ||| || |||| Sbjct 2089 ACAGGAAAGACCATCACCCTTGAAGTCGAGTCCTCCGATACCATCGACAATGTCAAGGCC 2030 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||| |||||||| ||||| || |||||||| |||||||| ||||||||||| Sbjct 2029 AAGATCCAAGATAAGGAGGGCATTCCCCCGGATCAACAGCGTCTTATCTTTGCCGGCAAG 1970 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | ||||| ||| ||| | | |||||||||||||| || || || ||| | || Sbjct 1969 CAACTTGAGGACGGCCGAACCCTTGCTGATTACAACATTCAGAAGGAGTCTACCCTTCAC 1910 Query 22423 TTAGT 22427 ||||| Sbjct 1909 TTAGT 1905 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || ||||| | ||||| || | ||||||| | ||| | |||| Sbjct 1511 ACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACGTCAAGGCT 1452 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||| ||||| || || ||||||||||| || |||||||| ||| Sbjct 1451 AAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGTCTCATCTTTGCCGGAAAA 1392 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || || |||||| || |||| |||||||| || || || ||||| | ||| Sbjct 1391 CAACTTGAAGACGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACACTCCAT 1332 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || || | || | || ||||| Sbjct 1331 TTGGTCCTCCGTCTCCGAGGAGG 1309 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || ||| |||| || ||||| ||| | | || || | || | |||| Sbjct 927 ACAGGCAAGACGATCACCCTCGAAGTTGAATCTAGTGACACTATCGATAACGTCAAGGCG 868 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| ||||||||||||||||| ||||| ||||| |||||||| || || |||||||| Sbjct 867 AAAATCCAAGACAAGGAGGGTATCCCACCTGATCAGCAACGTCTCATTTTCGCCGGCAAG 808 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || ||| || ||| | ||||||||||| || || | |||| ||| | || Sbjct 807 CAACTCGAAGATGGTCGTACCTTGTCCGATTACAATATCCAGGAGAAATCAACCCTTCAC 748 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || ||| | || | || || ||| Sbjct 747 TTGGTTCTCCGTCTCCGTGGTGGT 724 Score = 102 bits (112), Expect = 7e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 22240 TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAA 22299 ||||| || ||||| ||||| | || || ||| | | || || | ||| | |||| Sbjct 1227 TTAACTGGCAAAACCATCACTTTGGAGGTCGAATCATCGGACACGATTGACAACGTCAAG 1168 Query 22300 CAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGC 22359 || || ||||| ||||| || || ||||| |||||||| ||||| || ||||| || Sbjct 1167 GCCAAGATCCAAGATAAGGAAGGAATCCCACCGGATCAACAGCGTCTAATCTTTGCTGGA 1108 Query 22360 AAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATA 22419 || || | |||||| || || | || |||||||||||||||| || |||||| | Sbjct 1107 AAGCAACTTGAGGATGGTCGAACTTTGGCCAATTACAACATTCAAAAGGAGTCCACCCTT 1048 Query 22420 CATTTAGTT 22428 ||||| ||| Sbjct 1047 CATTTGGTT 1039 Score = 100 bits (110), Expect = 2e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 22240 TTAACCGGTAAAACGGTCACTCTTG-AAGTGGAAACCACCGATACCGTGGACGATATCAA 22298 || || || |||||| ||| ||||| |||| || || | || ||| | ||| | |||| Sbjct 2387 TTGACTGGCAAAACGATCA-TCTTGGAAGTCGAGTCCTCTGACACCATTGACAACGTCAA 2329 Query 22299 ACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGG 22358 || |||||||||||||| |||||||| || || || |||||| | || |||||||| Sbjct 2328 GGCGAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGCCGG 2269 Query 22359 CAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCAT 22418 || || | ||||| |||| | | || |||||||| |||||||| || ||| | Sbjct 2268 AAAGCAACTGGAGGACGGTTGCACTCTTGCGGACTACAACATCCAAAAAGAGTCGACCCT 2209 Query 22419 ACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| | ||| | ||| | || || || Sbjct 2208 TCATCTGGTTCTCCGACTCCGTGGTGG 2182 >seq12084 Length=2187 Score = 131 bits (144), Expect = 1e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || ||| |||| |||||||| ||| ||| || ||| | || | ||||| Sbjct 1941 ACAGGCAAGACGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACGTCAAAGCG 1882 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||||||||||||||| ||||| || || ||||| |||||||| || || |||||||| Sbjct 1881 AAAATTCAAGACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGGCAAG 1822 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || ||| ||| ||| | ||||| |||||||| || || ||||||||| | || Sbjct 1821 CAACTCGAAGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTCCAC 1762 Query 22423 TTAGT 22427 || || Sbjct 1761 TTGGT 1757 >seq12087 Length=1588 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||||||||| || || | |||| ||| | ||| | |||| | Sbjct 423 ACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATTGACAACGTCAAGGCA 364 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||||||||| |||||||| || |||||||| || | || ||||| || || Sbjct 363 AAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAACAGCGATTGATCTTTGCTGGTAAG 304 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||| || || ||||||| | |||| |||||||| || || || ||||| | ||| Sbjct 303 CAGTTGGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCCACTTTGCAT 244 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || || || | || || ||| Sbjct 243 CTCGTGTTACGTCTTCGTGGTGGT 220 Score = 86.0 bits (94), Expect = 5e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||||||||| ||||||| ||||| || | |||| ||| | ||| | |||| Sbjct 789 ACCGGTAAAACCATCACTCTCGAAGTTGAGTCGTCCGACACCATCGACAACGTCAAGGCT 730 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGT 22344 ||||||||||||||||||||||| || || || ||||||||| Sbjct 729 AAAATTCAAGACAAGGAGGGTATCCCTCCAGACCAACAACGT 688 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 22239 TTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAA 22298 |||||| || ||||| |||| || || || || || | || || | ||| | |||| Sbjct 140 TTTAACTGGCAAAACCATCACCCTAGAGGTTGAGTCCTCGGACACGATTGACAACGTCAA 81 Query 22299 ACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGG 22358 || || ||||| |||||||| || || || || |||||||||||||| |||||||| Sbjct 80 GGCCAAGATCCAAGATAAGGAGGGCATCCCGCCAGACCAACAACGTCTTATCTTTGCCGG 21 Query 22359 CAAACAGTTAGAGGAT 22374 |||||| | || ||| Sbjct 20 TAAACAGCTGGAAGAT 5 >seq12086 Length=376 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 22240 TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAA 22299 || ||||| |||||| |||| | ||||| || || |||| ||| | ||| | |||| Sbjct 232 TTGACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGACAACGTCAAG 173 Query 22300 CAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGC 22359 || || ||||||||||| ||||| || || || || |||||| | || |||||||| Sbjct 172 GCGAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGA 113 Query 22360 AAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATA 22419 || || | ||||| |||||| | | || |||||||| |||||||| || ||| | Sbjct 112 AAGCAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTT 53 Query 22420 CATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| | ||| | ||| | || || || Sbjct 52 CATCTGGTTCTCCGACTCCGTGGTGG 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419614396419520