Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4594 165 2e-35 seq12084 149 1e-30 seq12086 136 7e-27 seq12087 129 1e-24 seq12085 105 1e-17 seq2022 98.7 2e-15 >seq4594 Length=2528 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| || || || | ||||| || || |||||||| || |||||||| || |||| Sbjct 1307 TTCCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGG 1366 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||| || | || ||||| | || || ||||| || ||||| | ||||||||| || | Sbjct 1367 CGAGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAG 1426 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 ||||||| ||||||||||| ||||| ||||||||| || || || || | || || | Sbjct 1427 GAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAA 1486 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||||| |||||||| ||||| |||||| Sbjct 1487 CTTCCAAAGTGATGGTCTTTCCTGTGAGG 1515 Score = 140 bits (154), Expect = 6e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | |||| || || || ||||||||||||||||| || || | Sbjct 2180 TTCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCG 2239 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | || || || | ||||| ||||| || || | | ||| ||||| || | Sbjct 2240 CAAGAGTGCAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGG 2299 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| |||||||||||||||||||| ||||||||| || |||||||| | || || | Sbjct 2300 GAATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGA 2359 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGT 68437 |||||||| |||| ||||| || || Sbjct 2360 CTTCCAAGATGATCGTTTTGCCAGT 2384 Score = 136 bits (150), Expect = 7e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | ||||| || || |||||||| ||||| ||||| |||| || Sbjct 1020 TTCCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGG 1079 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || | ||||| || | ||||| || || || || || | ||||| || |||| Sbjct 1080 CCAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTG 1139 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || |||||||| ||||| ||||| ||||||||| || || ||||| | |||||| | Sbjct 1140 GGATTCCTTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGATGATTCGA 1199 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGT 68437 | ||||| ||||||||||| || || Sbjct 1200 CCTCCAAAGTGATGGTTTTGCCAGT 1224 Score = 123 bits (136), Expect = 5e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || || | | ||||| || |||||||| Sbjct 725 CCACCACGGAGACGGAGAACCAAGTGAAGGGTTGATTTCTCCTGGATATTGTAATCGGAC 784 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | ||||| |||||||| ||||| | ||| || || ||||| Sbjct 785 AAGGTACGACCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGTGGG 844 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| || || ||||||||| ||||| ||||| ||||| ||| Sbjct 845 ATACCCTCCTTGTCTTGGATTTTCGCCTTGACGTTATCGATAGTGTCACTAGATTCAACT 904 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAG 68440 || | |||||| || || || || || Sbjct 905 TCGAGGGTGATCGTCTTGCCTGTAAG 930 Score = 116 bits (128), Expect = 7e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | || || | ||||| || || || |||||||| || ||||| || |||| Sbjct 1599 TTCCTCCTTGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGG 1658 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | || || || | || || ||||| || || | | |||||| || | | Sbjct 1659 CAAGGGTACGGCCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGG 1718 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | ||||||||||||||||| ||||| || ||||| || || ||||| | ||||| | Sbjct 1719 GGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCA 1778 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||| ||||| || || || |||||| Sbjct 1779 CTTCCAGAGTGATCGTCTTACCGGTGAGG 1807 >seq12084 Length=2187 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || ||||| || || |||||||| || ||||| Sbjct 1739 CCACCACGGAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1798 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | ||||| |||||||| ||||| | ||| || || || || Sbjct 1799 AAGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGG 1858 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||||||||| || || |||||| ||||||||||| ||||| ||| Sbjct 1859 ATACCTTCCTTGTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACT 1918 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || | |||||| || || || |||||| Sbjct 1919 TCAAGGGTGATCGTCTTGCCTGTGAGG 1945 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | |||| ||| || |||||||| ||||||||||| ||||||| Sbjct 2033 TTCCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGG 2092 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | |||||||| | ||||| ||||| || || | | ||||| || || | Sbjct 2093 CCAGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAG 2152 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACG 68387 | || |||||||||||||| ||||| ||||||||| Sbjct 2153 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACG 2187 >seq12086 Length=376 Score = 136 bits (150), Expect = 7e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | |||| || || || ||||||||||||||||| || || | Sbjct 25 TTCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCG 84 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | || || || | ||||| ||||| || || | | ||| ||||| || | Sbjct 85 CAAGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGG 144 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || |||||||||||||| ||||| ||||||||| || |||||||| | || || | Sbjct 145 GGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGA 204 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||||||||||| ||||| || || Sbjct 205 CTTCCAAGGTGATCGTTTTGCCGGT 229 >seq12087 Length=1588 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || || || | || | |||||||| || |||||||| || |||| Sbjct 221 CCACCACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 280 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| |||||||| || || || || | || ||||| || || ||| Sbjct 281 AAGGTGCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGA 340 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||| ||||||||||||||| || |||||||| | || || || Sbjct 341 ATACCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACC 400 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAG 68440 || | |||||||| || || || || Sbjct 401 TCAAGAGTGATGGTCTTGCCGGTAAG 426 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| || ||||| || || || | ||||||||| || || ||||| ||| Sbjct 3 CCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGCGGGATGCCCTCC 62 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || ||||| ||||| ||||||||| || || ||||| | || || || || | |||| Sbjct 63 TTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGGACTCAACCTCTAGGGTG 122 Query 68424 ATGGTTTTTCCCGT 68437 |||||||| || || Sbjct 123 ATGGTTTTGCCAGT 136 Score = 89.7 bits (98), Expect = 9e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGT 68398 ||||||||| || || || || |||||||||||||| || ||||||||| |||||||| Sbjct 691 TTGTTGGTCTGGAGGGATACCCTCCTTGTCTTGAATTTTAGCCTTGACGTTGTCGATGGT 750 Query 68399 GTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 ||| | || || ||||| | ||||||||||| || || || Sbjct 751 GTCGGACGACTCAACTTCGAGAGTGATGGTTTTACCGGTAAG 792 >seq12085 Length=636 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||||| ||||| || || | | ||||| || || || || |||||| Sbjct 4 CCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTCC 63 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| ||||||||| || || || || | || || |||||||| ||| Sbjct 64 TTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTG 123 Query 68424 ATGGTTTTTCCCGTGAGG 68441 ||||| ||||| |||||| Sbjct 124 ATGGTCTTTCCTGTGAGG 141 >seq2022 Length=9689 Score = 98.7 bits (108), Expect = 2e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 |||||||| || || ||||||||||| ||||||||||||| |||||| ||||| ||| Sbjct 634 TGTTGGTCTGGGGGGATGCCTTCCTTCTCTTGAATCTTTGTCTTGACATTGTCGATCGTG 575 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || ||||| || || | ||||||||| || || |||||| Sbjct 574 TCGGCGGATTCGACCTCGAGGGTGATGGTCTTACCGGTGAGG 533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921366557621760