Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq4594 89.7 6e-13 seq12087 86.0 7e-12 >seq4594 Length=2528 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | ||| | |||||||| | ||| |||||||||||| ||||||| ||| Sbjct 1022 CCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGCC 1081 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || || ||||| ||||| || || || ||||| || || | ||| Sbjct 1082 AAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGG 1141 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | | ||||| || ||| || |||| ||| | | | |||||| ||||| || Sbjct 1142 ATTCCTTCCTTATCTTGGATCTTGGCCTTGA-CGTTGTCAATCGTGTCCGATGATTCGAC 1200 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTA 42186 || | |||||||||||||| |||| Sbjct 1201 CTCCAAAGTGATGGTTTTGCCAGTTA 1226 >seq12087 Length=1588 Score = 86.0 bits (94), Expect = 7e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| ||||| | |||||| ||| |||||| || || ||||| || |||| || || | Sbjct 232 ACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCC 291 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | |||||||||||| || || | |||||| || || | || | | ||||| Sbjct 292 GTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTT 351 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| ||| |||| ||| | | | |||||| || || || || | |||| Sbjct 352 GTCTTGGATCTTTGCCTTGA-CGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGA 410 Query 42172 TGGTTTTGCCCGTTAG 42187 |||| ||||| || || Sbjct 411 TGGTCTTGCCGGTAAG 426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543062004126720