Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq12084 118 2e-21 seq4594 107 5e-18 seq12086 98.7 2e-15 seq12085 87.8 4e-12 >seq12084 Length=2187 Score = 118 bits (130), Expect = 2e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || || ||||| |||| ||||||||| | ||| || | |||||| Sbjct 1754 AGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCT 1813 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| |||||||| |||||||| ||||| || || || ||||| || Sbjct 1814 TCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTTGTCT 1873 Query 199538 TGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| |||| ||| |||| |||||| | | ||| || || | |||||||| Sbjct 1874 TGAAT-TTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGATCGT 1932 Query 199597 CTTACCCGTGAG 199608 ||| || ||||| Sbjct 1933 CTTGCCTGTGAG 1944 Score = 109 bits (120), Expect = 1e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| ||||||||||||| |||||| || |||| ||| | |||||| Sbjct 2050 AGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCCAGAGTTCGACCATCT 2109 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 || || ||||||||||| ||||| | |||||| || |||||| |||||||| Sbjct 2110 TCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTC 2162 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| ||||||||||| | |||||||| | ||| |||||||||||||| |||| || Sbjct 2132 ATCTTTGCCGGAAAGCAACTCGAAGATGGTCGAACTCTGGCCGATTACAACATCCAAAAG 2073 Query 200998 GAGTCTACTCTTCACCTTGTT 201018 ||||| ||||||||||| ||| Sbjct 2072 GAGTCCACTCTTCACCTGGTT 2052 >seq4594 Length=2528 Score = 107 bits (118), Expect = 5e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || || || || || |||||||| ||||||| ||||||||| || | ||| Sbjct 2188 CGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGAGTG 2247 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||| ||||||||||| || || | ||| |||||||| || ||| ||| Sbjct 2248 CAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCT 2307 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| ||| || | |||||| | | || || ||||| Sbjct 2308 TCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAAG 2367 Query 199589 GTGATCGTCTTACCCGT 199605 ||||||| || || || Sbjct 2368 ATGATCGTTTTGCCAGT 2384 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || ||||||||||| | |||||| | |||||||| | ||||| || || ||| Sbjct 1046 TGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGCCAAAGTTCGACCATCCTCAAGTTGC 1105 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||| || ||||| |||||||| || ||||| |||||||| || || ||||| Sbjct 1106 TTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTTATCTTGGATCTTG 1165 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| || | ||||| | || ||| || ||||| ||||| || || || || Sbjct 1166 GCCTTGACGTTGTCAATCGTGTCCGATGATTCGACCTCCAAAGTGATGGTTTTGCCAGT 1224 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||||| || |||||||| |||| ||||||||| || | || | || ||| Sbjct 1324 AGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCT 1383 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || |||||||| ||||||||||| || ||||| ||| ||| || || || Sbjct 1384 TCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCT 1443 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | || || | | || || ||||| ||||| ||| Sbjct 1444 TGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTGATGGTC 1503 Query 199598 TTACCCGTGAG 199608 || || ||||| Sbjct 1504 TTTCCTGTGAG 1514 >seq12086 Length=376 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || || || || || |||||||| ||||||| ||||||||| || | || Sbjct 33 CGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGTG 92 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||| ||||||||||| || || | ||| |||||||| || || ||| Sbjct 93 CGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGGATACCT 152 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| || | |||||| | | || || ||||| Sbjct 153 TCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCCAAG 212 Query 199589 GTGATCGTCTTACCCGT 199605 |||||||| || || || Sbjct 213 GTGATCGTTTTGCCGGT 229 >seq12085 Length=636 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| || || | || || || ||||| || || | ||||||||| || | || Sbjct 232 TCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGT 291 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || ||||||| || || ||||| ||||| ||||| || || || || ||||| Sbjct 292 ACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGGATTCC 351 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| || ||| || | ||||| | | ||| || |||| Sbjct 352 TTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACTTCCAG 411 Query 199588 CGTGATCGTCTTACCCGTGAG 199608 |||||||||||||| ||||| Sbjct 412 AGTGATCGTCTTACCGGTGAG 432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178586149647936