Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq4594 113 2e-19 seq12084 100 1e-15 seq5113 96.9 1e-14 seq12085 95.1 5e-14 seq16264 86.0 2e-11 >seq4594 Length=2528 Score = 113 bits (124), Expect = 2e-19 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 391074 ACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAA 391133 ||||| ||||| || ||| | || || |||||||| || | ||||| | || Sbjct 1224 ACTGGCAAAACCATCACTTTGGAGGTCGAATCATCGGACACGATTGACAACGTCAAGGCC 1165 Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || || ||||||||||||||||| || || |||||||| ||| |||| || | || || Sbjct 1164 AAGATCCAAGATAAGGAAGGAATCCCACCGGATCAACAGCGTCTAATCTTTGCTGGAAAG 1105 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 |||||||| ||||| |||||||||| |||| || ||| | ||||| | || ||||| Sbjct 1104 CAACTTGAGGATGGTCGAACTTTGGCCAATTACAACATTCAAAAGGAGTCCACCCTTCAT 1045 Query 391254 TTAGT 391258 || || Sbjct 1044 TTGGT 1040 Score = 96.9 bits (106), Expect = 1e-14 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || || || || || || ||||| || || || || |||| ||| || | | || Sbjct 2092 CTTACAGGAAAGACCATCACCCTTGAAGTCGAGTCCTCCGATACCATCGACAATGTCAAG 2033 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || || ||||||||||| || ||||| || |||||||| ||| | || || | || Sbjct 2032 GCCAAGATCCAAGATAAGGAGGGCATTCCCCCGGATCAACAGCGTCTTATCTTTGCCGGC 1973 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 || |||||||| || || |||| | || ||||| || ||| | ||||| | || ||| Sbjct 1972 AAGCAACTTGAGGACGGCCGAACCCTTGCTGATTACAACATTCAGAAGGAGTCTACCCTT 1913 Query 391251 CACTTAGT 391258 |||||||| Sbjct 1912 CACTTAGT 1905 Score = 89.7 bits (98), Expect = 2e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || ||||| || || ||||| || || ||||| || || | ||||| | | ||| Sbjct 1806 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAATGTCAAA 1747 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || || ||||| |||||||| || || | ||||||||||||||||| || | || Sbjct 1746 GCCAAGATCCAAGACAAGGAAGGCATCCCCACAGATCAACAACGTTTAATCTTTGCCGGT 1687 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 |||||||| || || || | || | || || || || ||| | || || | || ||| Sbjct 1686 AAACAACTGGAGGACGGCCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCTT 1627 Query 391251 CACTTAGTATTAAGACTGAGAGGATAAATACA 391282 || || || | |||| |||| |||||| Sbjct 1626 CATTTGGTTCTCCGACTCCAAGGAGGAATACA 1595 >seq12084 Length=2187 Score = 100 bits (110), Expect = 1e-15 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || || || || || || ||||| |||||||| ||| | ||| || | ||| Sbjct 1944 CTCACAGGCAAGACGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACGTCAAA 1885 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 ||||||||||| |||||||| || || |||||||| |||||| | |||||| | || Sbjct 1884 GCGAAAATTCAAGACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGGC 1825 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 || ||||| |||||||| | || ||| | || || || || | ||||| | || || Sbjct 1824 AAGCAACTCGAAGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTC 1765 Query 391251 CACTTAGT 391258 ||||| || Sbjct 1764 CACTTGGT 1757 Score = 100 bits (110), Expect = 1e-15 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || || ||||| ||||||||||| ||||| |||||||| |||||||| || | || || Sbjct 2177 AAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGGAAAG 2118 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 ||||| |||||||| ||||| |||| ||||| || || | ||||| | || |||||| Sbjct 2117 CAACTCGAAGATGGTCGAACTCTGGCCGATTACAACATCCAAAAGGAGTCCACTCTTCAC 2058 >seq5113 Length=1121 Score = 96.9 bits (106), Expect = 1e-14 Identities = 286/438 (65%), Gaps = 5/438 (1%) Strand=Plus/Plus Query 364566 ATTCCATCTTTAGTTGATGGATTTAAACCTTCTCAAAGAAAAATTTTTTATGGAGCAAAT 364625 |||||||| | || ||||| || ||||| |||| | ||| | || | || || | Sbjct 115 ATTCCATCAATGGTAGATGGTTTCAAACCCGGTCAACGTAAAGTATTATTTG---CATGT 171 Query 364626 TTAAGAGGATTAGAAAAAGATCAAGTAAAAGTAGCTCAATTAGCAGGTT-TTGTATCTGA 364684 || | | || | |||| | || | |||||||| ||||||| ||| | |||| || || Sbjct 172 TTTAAAAGAAAATTGAAAGCTGAAATTAAAGTAGCACAATTAGGAGGATATTGT-TCAGA 230 Query 364685 CCGGGTAGCTTATCATCACGGTGAGGCAAGTTTAATGGGAGCAATAATTGGAATGGCACA 364744 | ||| |||||||| || || |||||| | | | | ||| | ||| | || || Sbjct 231 ACATTCAGCCTATCATCATGGAGAAGCAAGTCTCACTCAAACTATAGTCGGATTAGCTCA 290 Query 364745 AAATTTTGTTGGAAGTAATAATGTAAATTTACTAGAACCAAAAGGACAATTTGGAAGTCG 364804 ||||||||| |||||||||||| | ||| | || ||| || || ||||| || | ||| Sbjct 291 AAATTTTGTCGGAAGTAATAATATTAATGTCCTCTCACCTAATGGCCAATTCGGTACTCG 350 Query 364805 AGTAATGGGAGGTAAAGATTCTGCCAGCCCACGTTATATTTGGACCAAACTTGAAAAAGT 364864 | || ||||||||| | || || | ||||||| || || | ||||| | Sbjct 351 TGCCTCTGGTGGTAAAGATGCAGCTTCTGCAAGGTATATTTTCACTAATGTAGAAAAGAT 410 Query 364865 GGCAGGATTAATATTTAGAAAAGAAGATAATCCAATTTTAAATTATATTAATGATGATGG 364924 | || | || || | | |||| || | ||||| ||| | | |||||||| Sbjct 411 TACTAGAGTGATTTTCCCAGCATCAGATGATAACGTCTTAAACTATTTAACGGATGATGG 470 Query 364925 ATTAATGGTTGAACCTGAATTTTATCTTCCTATTATTCCTATGATTTTAGTAAATGGAGC 364984 | | || || |||| ||| | || || | || ||| | |||| |||||| | Sbjct 471 TACACAAATCGAGCCGGAATGGTATATCCCAATCTTACCGATGGTACTAGTGAATGGATC 530 Query 364985 AACAGGCATTGGTACTGG 365002 | || ||||| ||||| Sbjct 531 TAGTGGGATTGGAACTGG 548 >seq12085 Length=636 Score = 95.1 bits (104), Expect = 5e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || ||||| || || ||||| || || ||||| || || | ||||| | ||| Sbjct 432 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAACGTCAAA 373 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || || ||||||||||||||||| || || |||||||||||| |||| || | || Sbjct 372 GCTAAGATCCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTCTAATCTTTGCCGGT 313 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 |||||| | ||||| || | || | || || || || ||| | || || | || ||| Sbjct 312 AAACAATTGGAAGACGGTCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCTT 253 Query 391251 CACTTAGTATTAAGACTGAGAGGATAAATACA 391282 || || || | |||| ||||| ||| || Sbjct 252 CATTTGGTTCTCCGACTTCGAGGAGGAATGCA 221 >seq16264 Length=8938 Score = 86.0 bits (94), Expect = 2e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 451321 TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGC 451380 |||||| || || || ||||| || ||||| || || || ||||||||||| |||||||| Sbjct 5088 TGCAGTTATCACCGTCCCCGCCTACTTCAACGACGCCCAGCGGCAAGCAACCAAAGATGC 5147 Query 451381 AGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440 || |||||| | |||| || || |||| || || || || || |||||||| Sbjct 5148 TGGTGCAATTGCTAAGCTGGATGTCCTCCGTGTTATCAACGAGCCCACCGCTGCTGCTCT 5207 Query 451441 AGCATATGGACT 451452 |||||||| || Sbjct 5208 GGCATATGGTCT 5219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975156229086464