Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3561 161 1e-34 seq10961 147 3e-30 seq5113 131 2e-25 seq5954 96.9 4e-15 seq4248 96.9 4e-15 seq5111 95.1 2e-14 seq8335 87.8 2e-12 >seq3561 Length=13642 Score = 161 bits (178), Expect = 1e-34 Identities = 184/245 (75%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 7900 CATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAA 7959 ||| ||| |||||| | |||| ||| |||| ||| || |||||||| ||||| || Sbjct 4419 CATGTCGGATTGGACTTCGGCGTCCTCAAATTTTCGTCCTATCAGACGCTTGGCATCGAA 4360 Query 7960 AACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019 || |||| | ||||||||||| ||||||||| || || || ||||| |||||||| Sbjct 4359 GACGGTGTGGTGAGGGTTCATGGCGACTTGGTTCTTGGCGGCATCACCGATCAGACGTTC 4300 Query 8020 ATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAAT 8079 | | | | || || || ||||| || || || |||||||| ||||||||||| ||||| Sbjct 4299 -TGAGT--CGGTGAAAGCAACGTAGGAAGGAGTTGTTCGATTTCCTTGGTCGTTGGCAAT 4243 Query 8080 AATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAAT 8139 || || || || || |||||||| || || ||||| || || || || || | |||||| Sbjct 4242 GATCTCAACTCGATCATTTTGCCATACACCAACGCAGGAGTAGGTGGTACCGAGATCAAT 4183 Query 8140 ACCGA 8144 ||||| Sbjct 4182 ACCGA 4178 Score = 120 bits (132), Expect = 4e-22 Identities = 194/279 (70%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTT 7186 || || || || || |||||||| | ||||| || | || || | || || |||||| Sbjct 5409 GGAATACGAGTGGAACCACCGACAAGGACGATCTCGTGGACATTGGCCTTGTCAATCTTT 5350 Query 7187 GAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGT 7246 |||||||| || || ||||| || ||||| || ||||| | ||| | || || Sbjct 5349 GAGTCTCGGAGAACCTTCTCGACGGGCTCCATGGTCTTGCGGAAAAGGTCATTGCAGAGC 5290 Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 || || ||||| |||||||| | ||| || ||||| || | || || | | || || Sbjct 5289 TCTTCGAAACGAGCACGGGTGAGGGAAGTGTAGAAGTCGATACCCTCAAAAAGAGAGTCG 5230 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 ||||| |||| ||||| || | || || || || || || || ||||| || || || Sbjct 5229 ATTTCGATGGAGGTTTGGGCGGCAGAGGACAAGGTACGTTTGGCACGCTCGCAAGCAGTG 5170 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 || | |||||||| |||||| | ||| ||| | |||| Sbjct 5169 CGCAGACGACGAACGGCACGAGCGTTTGAGGAGAGATCT 5131 >seq10961 Length=29356 Score = 147 bits (162), Expect = 3e-30 Identities = 524/813 (64%), Gaps = 17/813 (2%) Strand=Plus/Minus Query 7014 CCGTTAAGAT-GGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 ||| ||||| ||| |||||||| | || ||||| ||||| ||||| |||||||| || Sbjct 6116 CCGGTAAGAACGGCAGCTTGGACGGCAGCACCGTAAGCGACAGCCTCGTCGGGGTTGATG 6057 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132 | || |||| || || ||| |||| || | || ||| || || ||||| Sbjct 6056 CTCTTGTTCAATTGACGTCCACCAAAGAAATCGGAAACCAGAGATTGGATCTTGGGGATA 5997 Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCT 7192 || || ||||||||||| | ||||| || | ||||| | || || ||||| | ||| Sbjct 5996 CGGGTGGATCCACCGACAAGGACGATATCTTCAACTTTGGCCTTGTCAATCTTGGCGTCC 5937 Query 7193 CGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAA-GTC-CATACACAGTTCCT 7250 || || || || || || | | | ||||| || | | | || | Sbjct 5936 TTGAGAACCTTGTCAACGGGGTCGAGAGTTGATCGGAAGGTTGTGGCGTTGATC--TCTT 5879 Query 7251 CAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTT 7310 | || || || || | |||| | |||| ||| || | | | | || || | || Sbjct 5878 CGAATCGGGCTCGAGAGATGGCAGATGAGAAGTCAGTTCCTTGGAAGAGGGAGTCGACTT 5819 Query 7311 CAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTA 7370 | | ||| ||||| | ||||| | ||||| || || ||||| ||||| | || | Sbjct 5818 CGACGGTGGTTTGGGTAACGGAAGAGAGTGTTCGTTTGGCTCGCTCGCACGCAGAGCGAA 5759 Query 7371 AACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTT 7430 ||||||||||||||| | | || ||| || || || || || ||||| | Sbjct 5758 GACGACGAAGGGCACGGGCATCTCCATCAATGTCGAGTTTGGTCTTTCGCTTGAACTCGT 5699 Query 7431 CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCG 7490 ||||||| |||||| ||||| || || || |||||||| || || || | Sbjct 5698 TTTTGAAGTGTTCAAGGAGAGCATTGTCGAAGTCCTCGCCTCCCAAGTGGGTGTCACCAG 5639 Query 7491 CGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTAC 7550 |||| |||||||| || | ||| || | ||| | | || ||||| || |||| Sbjct 5638 CGGTGGCTTTGACAGTGAAAACACCACCAGCGATGGAAAGGAGAGAGACATCGAAAGTAC 5579 Query 7551 CACCACCCAGGTCAAAAATGAGTAC-GTTCGTATCGTC--GTCTTTGTT---------CT 7598 |||| |||| ||| ||||| || || |||||| | || ||||| || || Sbjct 5578 CACCTCCCAAGTCGAAAATCAGGACGGTTCGTTCCTTCTTTTCTTTTTTCTCACTGGCCT 5519 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | | |||||||| ||||| || || || || || || || || ||||| || || || Sbjct 5518 CACCAAGACCGTAGGCGATGGCAGCGGCGGTGGGCTCGTTGATGATACGGAGCACGTCCA 5459 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 | || || |||| | ||||| || || | || || || ||||| |||||||| | Sbjct 5458 GACCGGCGATAGCACCAGCATCCTTGGTGGACAACCGCTGTGAGTCGTTGAAGTAGGCAG 5399 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCA 7778 | || || | ||| || | | |||| | ||| || | | | || || | || || | Sbjct 5398 GCACGGTGATGACGGCCTTCTTGACCTCCTTGCCCAACTTGGTCTCGGCAGTCTCCTTGA 5339 Query 7779 TTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 ||||| || ||||| | || ||||||| || Sbjct 5338 GCTTGGTGAGGACCATGGCGGAGATCTCTTGAG 5306 >seq5113 Length=1121 Score = 131 bits (144), Expect = 2e-25 Identities = 313/468 (67%), Gaps = 18/468 (4%) Strand=Plus/Minus Query 183122 ATATCTAACGGATTAAACGGTGGTATATATGAACTAAATCCGGTACCAATACCTTCAGTT 183181 || || | ||||||| | ||||||| |||||| |||| || ||||| || || | Sbjct 587 ATCTCGATCGGATTATAGTTCGGTATATCTGAACTCCATCCAGTTCCAATCCCACTAGAT 528 Query 183182 CCATTTACCAAAACGGTCGGTAATATAGGAACATAATAGTCAGGTTCGATTTGTTTACCG 183241 ||||| || | || ||||||| || || | ||| | || || ||||||||| |||| Sbjct 527 CCATTCACTAGTACCATCGGTAAGATTGGGATATACCATTCCGGCTCGATTTGTGTACCA 468 Query 183242 TCGTCGTCGAGATAGTTTAATACTGGATCATCTT----TGGGATCAAAA----AGTATTC 183293 || || | ||||||||| || ||||||| ||||| | | |||| || Sbjct 467 TCATCCGTTAAATAGTTTAAGACGTTATCATCTGATGCTGGGAAAATCACTCTAGTAATC 408 Query 183294 TCGCGTTTTTAGTCAATTTTGTAAATATATACCTGGTTTGACTCGCGTCTTTACCACCCA 183353 | ||| || || || || || |||||||| | | || ||||||||||| Sbjct 407 T----TTTCTA--CA--TTAGTGAAAATATACCTTGCAGAAGCTGCATCTTTACCACCAG 356 Query 183354 TGAGACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATATTATTCGACCCCGTAA 183413 | ||| ||||| ||||| ||| ||| ||| | |||||||||||| || || Sbjct 355 AGGCACGAGTACCGAATTGGCCATTAGGTGAGAGGACATTAATATTATTACTTCCGACAA 296 Query 183414 AATTATGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCACCGTGGTGATACGATG 183473 |||| || |||||| || || || | | | | |||| || || ||||| | || Sbjct 295 AATTTTGAGCTAATCCGACTATAGTTTGAGTGAGACTTGCTTCTCCATGATGATAGGCTG 236 Query 183474 TTTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTCAGATGT-AAGATTCTTT 183532 | ||| ||| ||| | ||||||| || || || ||||||| | | || |||||| Sbjct 235 AATGTTCTGAACAATATCCTCCTAATTGTGCTACTTTAATTTCAGCTTTCAATTTTCTTT 176 Query 183533 GTGAAACACGCGTATAACACTTTTCGTTGGGATGGTTTTAAACCATCT 183580 | ||||| || |||| ||||| ||||| ||||| ||||||||| Sbjct 175 -TAAAACATGCAAATAATACTTTACGTTGACCGGGTTTGAAACCATCT 129 >seq5954 Length=8855 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22697 AACAAAAATGTTTATACCTTGGTAACCTAGATGCGAAACGAGATTGGGGTCATGCACGCG 22756 ||||| ||||||||||| | || || | || |||||||||||||| ||||| | Sbjct 3256 AACAAGAATGTTTATACTTAGGAAATTTGTCAGCAAAACGAGATTGGGGCCATGCCAAAG 3315 Query 22757 ATTACGTGAAATGTATGTGGAAAATATTACAACAAGATAAACCGGAAGATTTTGTTATTG 22816 |||| || | |||||||||| || |||||||||||| ||||||| ||||| || ||| Sbjct 3316 ATTATGTAGAGGGTATGTGGAAGATGTTACAACAAGATCAACCGGATGATTTCGTACTTG 3375 Query 22817 CAACAGGCGTAAC 22829 | || || | ||| Sbjct 3376 CTACTGGTGAAAC 3388 >seq4248 Length=17287 Score = 96.9 bits (106), Expect = 4e-15 Identities = 179/259 (69%), Gaps = 9/259 (3%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||| || |||||||| || || || ||||| || ||| ||||||| ||| Sbjct 15033 ATCGAAATCTTCTCCTCCCAAGTGAGTGTCACCAGCGGTAGCCAAGACCTCAAAGACACC 14974 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGAG 7572 | || || || | || ||||| || || ||||| || || || | ||||| Sbjct 14973 CTCATCGATCGATAGTAGTGAGACATCGAAAGTTCCACCTCCTAGATCGTATACAATGAT 14914 Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 | || | | || ||| |||| |||| || ||||| || || || || || ||||| Sbjct 14913 TTGGTGC-TCTC----CCTTCGTTC-TATCCAGTCCGTAGGCAATCGCTGCGGCAGTTGG 14860 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 ||| || | ||| || || ||| || || ||||| || | ||||| || || ||||| Sbjct 14859 TTCGTTGACAATTCGGAGTACGTTAAGTCCGGCAATCGTACCGGCATCCTTGGTAGCTTG 14800 Query 7693 TCGTTGCGAATCGTTAAAG 7711 || || | ||||| ||| Sbjct 14799 ACGCTGAGCGTCGTTGAAG 14781 >seq5111 Length=918 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 184206 CACTCGCGTCACGCACGTTCTTACATTTACCCCTAAGCGGAAAAACACCGTAATGATCAC 184265 |||| || || || ||||| | ||||||||||||||| ||||| || |||| ||||| Sbjct 761 CACTAGCTTCTCGGACGTTAAGAAGTTTACCCCTAAGCGGGAAAACGCCATAATTATCAC 702 Query 184266 GACCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAA 184325 |||| | ||| || | ||||||| ||| | | ||| || ||||| || ||||| | | Sbjct 701 GACCGATAACCGATAATCCAGCAACTGCTAAGGATTTGGCTGAATCCCCCTCGGTTAAGA 642 Query 184326 TAAGAGTACACTTACCAGAGTGTGTGGTACCGGCTTTATTGGCATCGTCGAGTTTTGGAA 184385 | | ||||| | ||| | | || || || ||||| ||||| || | ||| | Sbjct 641 TCAATGTACAATCTGCAGCTTTTCGTGTTCCAGCATTATTAGCATCTTCTAATTTCACTA 582 Query 184386 TACCCGTTATTTTTGAT--TTACGAGACCCATCTGtttttttCAA 184428 | || || ||| ||||| || | || ||||| ||||| || || Sbjct 581 TTCCTGTAATTCTTGATCGTTTC--GATCCATCGGTTTTCTTTAA 539 >seq8335 Length=7417 Score = 87.8 bits (96), Expect = 2e-12 Identities = 291/443 (66%), Gaps = 21/443 (5%) Strand=Plus/Minus Query 11251 ACATCAGGTAAAGAAACTTGTATTTTACGATCAAATCTACCGGGGCGTAATAACGCATCG 11310 ||||||||| | ||| || | |||||| |||||||| || | | ||| || | Sbjct 5139 ACATCAGGTCTATCAACAGCGATATGACGATCGAATCTACCTGGTCTGAGTAAAGCTTTA 5080 Query 11311 TCGAGTATATCGATACGGTTTGTTGCACCTATAACAACAATTT-CAGTTTCATTCTCGAA 11369 || |||| ||| ||| || || || ||| || || | | | | || | | ||||| Sbjct 5079 TCTAGTACATCAGCACGATTAGTACCAGCTAGGACGACGACATGCTGGTT-AGTATCGAA 5021 Query 11370 ACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCACGCTCATCGTTTGCCGCAAA 11429 || |||||||| || || ||| |||| || ||| || ||||||||| | | Sbjct 5020 GCCGTCCATTTCCACTAGTAGTTGATTAAGCGTAGATTCTCGTTCATCGTTTCC-----A 4966 Query 11430 CCCATTCATACTTCTTTTC--------TTACCAATCGCATCAATTTCATCTATAAAGATA 11481 ||||| | || ||||| |||||||||||||| || ||||||| ||| | | Sbjct 4965 CCCATGGCTCCTGATTTTCCTCGAGCTTTACCAATCGCATCTATCTCATCTACAAATACA 4906 Query 11482 ATACACGGTTGATT-TTCACGTGCCAATTCAAATATATCACGGACTCTTTTTGCGCCTAC 11540 || |||||| ||| ||| | || | |||||| ||| || |||| || ||||| Sbjct 4905 ATGCACGGTGCATTCTTCTTG-GCTGTTGCAAATAAATCTCGTACTCGAGATGGTCCTAC 4847 Query 11541 GCCTACAAACATTTCAACGAACGATGACCCCGAACACTGA-ATAAAAGGAACGGAAGATT 11599 || |||||||| || || || ||| || | | || || | || || || | || Sbjct 4846 TCCGACAAACATCTCTACAAATTCTGATCCTG-ATACCGATAGGAATGGTACACCTGCTT 4788 Query 11600 CACCCGCTATAGCACGTGCTAAAAGTGTTTTACCTGTACCTGGTTTACCTGTTAATAAT- 11658 | |||||| |||| |||| | || || || || ||||| ||||| ||| || Sbjct 4787 CTCCCGCTGTAGCTTTGGCTAGTAAGGTCTTCCCCGTTCCTGGCGGACCTG-AAATCATA 4729 Query 11659 GCACCCCTTGGTATTTTAGCACC 11681 || || | |||||||| || || Sbjct 4728 GCTCCTTTCGGTATTTTGGCTCC 4706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634956487134720