Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq12084 93.3 3e-13 seq4594 93.3 3e-13 seq5113 89.7 4e-12 seq16264 87.8 1e-11 >seq12084 Length=2187 Score = 93.3 bits (102), Expect = 3e-13 Identities = 104/137 (76%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| || || ||||| || ||| ||||| || |||||||| || |||||| Sbjct 2043 GAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGG--ATGTTGTAATCGGCCAGAGTT 2100 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||| ||||| ||||||||||| || | | || ||||| ||||| |||||| Sbjct 2101 CGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCT 2160 Query 563374 TCTTTATCTTGAATTTT 563390 || || ||||| || || Sbjct 2161 TCCTTGTCTTGGATCTT 2177 >seq4594 Length=2528 Score = 93.3 bits (102), Expect = 3e-13 Identities = 104/137 (76%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||| ||||| || ||||||||||| ||| | ||||| || ||||| || || ||||| Sbjct 2190 GAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGG--ATGTTGTAGTCCGCAAGAGTG 2247 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | || || ||||| |||||||||||||| | | |||||| || || ||||| ||| Sbjct 2248 CAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCT 2307 Query 563374 TCTTTATCTTGAATTTT 563390 || || |||||||| || Sbjct 2308 TCCTTGTCTTGAATCTT 2324 Score = 89.7 bits (98), Expect = 4e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || | ||||||||| || || ||| ||||||||||| || |||| Sbjct 1896 AGACGGAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCGG 1955 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || |||||||| || |||||||| ||||| | || ||||| || ||||| || || Sbjct 1956 CCGTCCTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCC 2015 Query 563377 TTATCTTGAATTTT 563390 |||||||| || || Sbjct 2016 TTATCTTGGATCTT 2029 >seq5113 Length=1121 Score = 89.7 bits (98), Expect = 4e-12 Identities = 220/329 (67%), Gaps = 5/329 (2%) Strand=Plus/Minus Query 428255 GTAAAGATATATCTTGCGCTTGCGGAATCTTTACCTCCTGACATTCTAGTTCCAAATTGT 428314 || || ||||| ||||| || | ||||||||| || || | ||| || ||||| Sbjct 395 GTGAAAATATACCTTGCAGAAGCTGCATCTTTACCACCAGAGGCACGAGTACCGAATTGG 336 Query 428315 CCATTAGGCATCAATAAATTAATATTATTACTTCCCACATAATTTTGGGCCATATTAACA 428374 |||||||| | | |||||||||||||||||| ||| ||||||| || | || Sbjct 335 CCATTAGGTGAGAGGACATTAATATTATTACTTCCGACAAAATTTTGAGCTAATCCGACT 276 Query 428375 ATGGTACTAGTTAAGGATTG-TTCACCATGATGATATTTAGTTCTTTTTGAAACTGCACC 428433 || || || | || ||| ||| ||||||||||| | || |||| || Sbjct 275 ATAGTTTGAG-TGAGACTTGCTTCTCCATGATGATAGGCTGAATGTTCTGAACAATATCC 217 Query 428434 TTGTAATTCTGATACCTTTATTTCTTCTTTATAAATACCTTCTTCTACTGATCCATAAAA 428493 | ||||| || ||| || ||||| |||| || | ||| | || || || | || Sbjct 216 TCCTAATTGTGCTACTTTAATTTCAGCTTT-CAATTTTCTTTTAAAAC--ATGCAAATAA 160 Query 428494 TACTTTGCGTTGTGATGGTTTGAATCCATCCATAATATTAGGTATAGATCTTAAATTATC 428553 |||||| ||||| |||||||| ||||| | || || || ||||| | |||||| Sbjct 159 TACTTTACGTTGACCGGGTTTGAAACCATCTACCATTGATGGAATCGATCTAATATTATC 100 Query 428554 ATCCACTGAGAATGATATTAGTTCTTGAT 428582 | ||| |||||| | || | |||| || Sbjct 99 AGCCATCGAGAATAAAATCAACTCTTTAT 71 >seq16264 Length=8938 Score = 87.8 bits (96), Expect = 1e-11 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 550399 TGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGC 550458 |||||| || || || || || || || || ||| | || || ||||| || |||||||| Sbjct 5088 TGCAGTTATCACCGTCCCCGCCTACTTCAACGACGCCCAGCGGCAAGCAACCAAAGATGC 5147 Query 550459 TGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518 ||| |||||| || |||| || ||| ||||||| || || || |||||||| || Sbjct 5148 TGGTGCAATTGCTAAGCTGGATGTCCTCCGTGTTATCAACGAGCCCACCGCTGCTGCTCT 5207 Query 550519 TGCATATGGACTTGAT 550534 |||||||| || ||| Sbjct 5208 GGCATATGGTCTGGAT 5223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028121540801920