Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq12085 145 6e-30 seq4594 145 6e-30 seq12087 116 3e-21 seq12084 104 2e-17 seq12086 102 6e-17 >seq12085 Length=636 Score = 145 bits (160), Expect = 6e-30 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||| | || | ||| |||||||||||||| ||||| || || ||||| |||| Sbjct 225 TTCCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGG 284 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | || | | || |||||||| ||||| ||||| || | ||| |||||||| || | Sbjct 285 CAAGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGG 344 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| |||||||| || || ||| || | || | ||||| |||| ||||| Sbjct 345 GGATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCA 404 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGT 101445 |||| ||||||| ||| || ||||| Sbjct 405 CTTCCAGAGTGATCGTCTTACCGGT 429 >seq4594 Length=2528 Score = 145 bits (160), Expect = 6e-30 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||| | || | ||| |||||||||||||| ||||| || || ||||| |||| Sbjct 1599 TTCCTCCTTGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGG 1658 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | || | | | || |||| ||| ||||| ||||| || ||||| |||||||| | | Sbjct 1659 CAAGGGTACGGCCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGG 1718 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | |||||||| || ||||| || || ||| ||| | || | ||||| |||| ||||| Sbjct 1719 GGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCA 1778 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGT 101445 |||| ||||||| ||| || ||||| Sbjct 1779 CTTCCAGAGTGATCGTCTTACCGGT 1803 Score = 132 bits (146), Expect = 4e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| |||| | ||| | ||| ||||||||||| || || ||||| || ||||||| || Sbjct 1020 TTCCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGG 1079 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||||| |||| || | |||||| || ||||| || | |||||||||||| || | Sbjct 1080 CCAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTG 1139 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| |||||||| || || || || | || | ||||| || | ||| | Sbjct 1140 GGATTCCTTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGATGATTCGA 1199 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 | || | ||||| |||||||| ||||| Sbjct 1200 CCTCCAAAGTGATGGTTTTGCCAGTTAA 1227 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| | ||||| ||||||||||| || || || || |||||||| || Sbjct 1887 CCACCTCGAAGACGGAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 1946 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | | || || | |||||| || ||||| || | |||||||||||| || ||| Sbjct 1947 AGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGA 2006 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || |||||||| || || || ||| | || | || || || | || ||| Sbjct 2007 ATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGGAGGACTCGACT 2066 Query 101423 TCAAGAGTGACCGTTTTGCCGGT 101445 ||||| |||| || || || || Sbjct 2067 TCAAGGGTGATGGTCTTTCCTGT 2089 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || |||||||| |||| | || ||||||||||||| | || | | Sbjct 736 ACGGAGAACCAAGTGAAGGGTTGATTTCTCCTGGATATTGTAATCGGACAAGGTACGACC 795 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||| || || || || | ||| || ||||| || || || || || || Sbjct 796 ATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGTGGGATACCCTCCTT 855 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| || || | || | ||||||| | ||| ||||| || |||| Sbjct 856 GTCTTGGATTTTCGCCTTGACGTTATCGATAGTGTCACTAGATTCAACTTCGAGGGTGAT 915 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATAT 101463 ||| ||||| || |||| | || | |||| Sbjct 916 CGTCTTGCCTGT--AAGTCTGTAAAGATAT 943 >seq12087 Length=1588 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 |||||| || | ||| | || || || || || || ||||| ||||| | || | | | Sbjct 232 ACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCC 291 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || ||||| |||||||| ||||| ||||| ||||||||||| || ||||| ||||| || Sbjct 292 GTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTT 351 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || ||| || || | || | ||||| || | || || |||||||||| Sbjct 352 GTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGAT 411 Query 101434 CGTTTTGCCGGT 101445 || |||||||| Sbjct 412 GGTCTTGCCGGT 423 >seq12084 Length=2187 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| |||| | ||| | ||| | ||||| || || || ||||| || |||||||||| Sbjct 2033 TTCCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGG 2092 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||||| |||| || | |||||| || ||||| || |||||||||||||| || | Sbjct 2093 CCAGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAG 2152 Query 101361 GAATGCCTTCTTTATCTTGAATTTT 101385 | || ||||| || ||||| || || Sbjct 2153 GGATTCCTTCCTTGTCTTGGATCTT 2177 Score = 100 bits (110), Expect = 2e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| ||||| || || || ||||| |||| | || | | |||| || Sbjct 1757 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCTTCG 1816 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || || || || | ||| || ||||| || || || ||||| || |||||| Sbjct 1817 AGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTTGTCTTGA 1876 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| || | || | |||||| | ||| |||||||| |||| ||| ||| Sbjct 1877 ATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGATCGTCTTG 1936 Query 101441 CCGGT 101445 || || Sbjct 1937 CCTGT 1941 >seq12086 Length=376 Score = 102 bits (112), Expect = 6e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||||||||| || |||||||| || ||||| || || | || | | || || Sbjct 44 AACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGTGCGACCGTCCTC 103 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 || |||||| || ||||| |||||||| || || || || || || ||||| || ||||| Sbjct 104 CAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTG 163 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || || || || | || | ||||| || | || ||||| | |||| |||||| Sbjct 164 GATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTGATCGTTTT 223 Query 101440 GCCGGTTAA 101448 |||||| || Sbjct 224 GCCGGTCAA 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396171143288256