Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4594 89.7 4e-13 seq12087 82.4 6e-11 seq12085 82.4 6e-11 >seq4594 Length=2528 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| |||||||||| || |||| |||| || | ||||| |||||||| Sbjct 1922 CTCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCAAA 1981 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || || ||||||||||||| ||||| ||||||||| || Sbjct 1982 GATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTATC 2020 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || |||||| ||||| ||||| || | || | || |||| ||| Sbjct 1619 ACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCGTCCTCC 1678 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || ||||||||||| || | || |||||||| ||||| | ||| |||||||| Sbjct 1679 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTCTTGG 1738 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | | || |||| ||||| |||| || ||||| || Sbjct 1739 ATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGAGTGATCGTCTTA 1798 Query 48738 CCCGT 48742 || || Sbjct 1799 CCGGT 1803 >seq12087 Length=1588 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || ||||| | ||| | ||| ||| || || || ||||| || | | | || Sbjct 230 AGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGG 289 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||||||||||||| ||||| |||| |||||||||||| | ||||| || ||| Sbjct 290 CCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCC 349 Query 48669 TTGTC 48673 ||||| Sbjct 350 TTGTC 354 >seq12085 Length=636 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || |||||| ||||| ||||| || | || | ||| |||| ||| Sbjct 245 ACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGACCGTCTTCC 304 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||||||||| || || || |||||||| | ||| | || ||||| || Sbjct 305 AATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGG 364 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| || | | | | || |||| ||||| |||| || ||||| || Sbjct 365 ATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACTTCCAGAGTGATCGTCTTA 424 Query 48738 CCCGT 48742 || || Sbjct 425 CCGGT 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380834495429184