Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq12084 105 4e-17 seq4594 105 4e-17 seq12085 96.9 2e-14 >seq12084 Length=2187 Score = 105 bits (116), Expect = 4e-17 Identities = 108/139 (78%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 || |||||||| || || ||||| || ||| ||| || || ||||| || |||| Sbjct 2041 CGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATG--TTGTAATCGGCCAGAG 2098 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 ||| |||||| ||||||||||| ||||| || | ||| |||||||| ||||| |||| Sbjct 2099 TTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTC 2158 Query 480670 CTTCCTTGTCTTGAATCTT 480688 ||||||||||||| ||||| Sbjct 2159 CTTCCTTGTCTTGGATCTT 2177 Score = 100 bits (110), Expect = 2e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| || || ||||| |||||||| |||||||| || || |||||||| Sbjct 1810 ATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTT 1869 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||||||||| || |||||| || || || ||| || | | ||||||||| || Sbjct 1870 GTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGAT 1929 Query 480737 AGTTTTACCGGTGAG 480751 || || || ||||| Sbjct 1930 CGTCTTGCCTGTGAG 1944 >seq4594 Length=2528 Score = 105 bits (116), Expect = 4e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| || | ||||| ||| || || || || |||||||| || ||| Sbjct 1893 CGAAGACGGAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTT 1952 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | || ||||||||||| || ||||| |||||||| |||||||| || ||||| || Sbjct 1953 CGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCC 2012 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| ||||| ||||| |||||| || || ||||| Sbjct 2013 TCCTTATCTTGGATCTTGGCCTTGACATTGTCGATGGTATC 2053 Score = 102 bits (112), Expect = 5e-16 Identities = 108/139 (78%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 || |||||||| || | |||||| || ||| |||| ||| || |||| || | || Sbjct 1028 CGGAGACGGAGAACCAAATGAAGGGTGGACTC-CTTTTGAATG-TTGTAATTGGCCAAAG 1085 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 ||| ||| |||||||||||||||||||| || ||||| |||||||| || || |||| Sbjct 1086 TTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTC 1145 Query 480670 CTTCCTTGTCTTGAATCTT 480688 ||||||| ||||| ||||| Sbjct 1146 CTTCCTTATCTTGGATCTT 1164 Score = 96.9 bits (106), Expect = 2e-14 Identities = 122/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| || ||||| || |||||||| || ||| | ||| || || || || || ||| Sbjct 2187 ACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATG--TTGTAGTCCGCAAGA 2244 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | || || ||||||||||| |||||||| | |||||| || || || ||||| Sbjct 2245 GTGCAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATA 2304 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 |||||||||||||||||||| ||||| ||||| || |||| Sbjct 2305 CCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAG 2350 Score = 95.1 bits (104), Expect = 8e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||||||||| ||||| ||||| || ||||||||||| || |||||||| || |||||| Sbjct 1381 TCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTG 1440 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| ||||| ||||| ||||||||||| Sbjct 1441 TCTTGGATCTTAGCCTTGACGTTGTCAATAGTATC 1475 Score = 86.0 bits (94), Expect = 4e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || ||||| || | |||||| ||| ||||| || || || || || || || | | Sbjct 1610 AGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGG 1669 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 || || ||||| || || ||||| || | |||||||||||| | || || |||||| Sbjct 1670 CCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCC 1729 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 |||||||| ||||| ||||||| ||||| || || | | ||| || || Sbjct 1730 TTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGAGTG 1789 Query 480735 ATAGTTTTACCGGTGAG 480751 || || ||||||||||| Sbjct 1790 ATCGTCTTACCGGTGAG 1806 >seq12085 Length=636 Score = 96.9 bits (106), Expect = 2e-14 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| ||||||||||| ||||| || | ||| |||||||| ||||| ||||||||||| Sbjct 6 ATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTCCTT 65 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 |||||| ||||| ||||| ||||||||||| Sbjct 66 GTCTTGGATCTTGGCCTTGACGTTGTCAATAGTATC 101 Score = 91.5 bits (100), Expect = 1e-12 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| || | |||||| ||| ||||| || || || || || || || Sbjct 233 CGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTA 292 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||||| | ||| || || ||||| || |||||||||||||| || || |||||| Sbjct 293 CGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGGATTCCT 352 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||| ||||| ||||| |||||| ||||| || || | | ||| || Sbjct 353 TCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACTTCCAGA 412 Query 480732 GTAATAGTTTTACCGGTGAG 480751 || || || ||||||||||| Sbjct 413 GTGATCGTCTTACCGGTGAG 432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267226591126784