Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq10000 131 2e-25 seq5111 84.2 3e-11 >seq10000 Length=7706 Score = 131 bits (144), Expect = 2e-25 Identities = 418/630 (66%), Gaps = 24/630 (4%) Strand=Plus/Plus Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 || || ||||| | ||||| ||||| || || || || || || ||| | || ||| Sbjct 5109 AATCAGAAGAACCTTGGAACCATCAAATCATCCAACCTCTGTACCGAGATTATCGAATAC 5168 Query 76016 ACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTC 76075 | | || || || ||||| |||||||| || || ||| | |||| ||| || Sbjct 5169 TCCGCCCCTGACGAAGTCGCAGTTTGTAATTTGGCCTCGATTGCCTTACCAACTTATATC 5228 Query 76076 AATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACC 76135 || | ||| | || | | ||||||||||| |||| ||| || ||| Sbjct 5229 GTCGATG------GCAAATACGACTTCCACAAACTTCATGAGGTCACCAAGGAAGTCACC 5282 Query 76136 AAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTG--AGACTGCGCGAAAGT 76193 | ||||| || ||| | || |||| |||| || |||| | ||| ||| | |||| Sbjct 5283 TACAATCTGAATCGAATTATCGACATCAATTACTA-CCCGATCCCAGAG-GCGAGGAAGT 5340 Query 76194 CTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTT-ATT 76252 | || ||| |||| | || |||||| | || || ||||| || || || | || | Sbjct 5341 CGAACATGAGACATCGTCCGATTGGTATCGGAGTACAAGGACTTGCTGACGCTTTCCAAA 5400 Query 76253 TTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAA 76312 | | ||||| |||| || |||| | || ||||| ||||| ||| ||||||||| Sbjct 5401 TCCTCAAGCTAC-CATTCGAGTCAGCAGCTGCGAAGGAACTGAATACTCAGATCTTTGAA 5459 Query 76313 ACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCC-TA 76371 || ||||||| || || || ||||| ||| ||||| || ||| ||| || Sbjct 5460 ACTCTGTATCATGCTTCGCTAGAGGCCTCCAATGAGTTGGC-GATCAAAGAGGGTCCATA 5518 Query 76372 TGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGG 76431 |||||| ||| || || ||||| ||||| | ||||| ||||| ||||||| | | Sbjct 5519 TGAGACTTTTCCCGGCTCACCCGCCAGTCAAGGTATCCTTCAATTTGACATGTGGG-ACG 5577 Query 76432 TGAAACCAAGCTCAACTA--CGACTGGGAT-GTTCTCAAG-GAACGCATCAAGGAGAAGG 76487 |||| || | | || || |||||| | | ||| ||| | ||||| | | Sbjct 5578 TGAAGCC-TTCGAATTTATGGGAGTGGGATAGCTTGAAAGAGAAAG--TCAAGACCACAG 5634 Query 76488 GTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAAT-CTTG 76546 | |||| || || || | ||||| |||||||||||||| || ||||| |||| Sbjct 5635 GGATTCGGAATTCCCTCTTACTTGCACCTATGCCAACAGCCTCGACGAGTCAAATCCTTG 5694 Query 76547 GGTAATAATGAATGCTTTGAACCATACACA 76576 ||| ||| ||||||||||||||||||||| Sbjct 5695 GGT-TTAACGAATGCTTTGAACCATACACA 5723 >seq5111 Length=918 Score = 84.2 bits (92), Expect = 3e-11 Identities = 232/348 (67%), Gaps = 12/348 (3%) Strand=Plus/Plus Query 13517 AAGAAGACCGATGGTGCTCGCAAG--TCCAAAATTACCGGTATTCCCAAGTTGGATGACG 13574 ||||| |||||||| ||| || || | |||||| || || || || || || | Sbjct 542 AAGAAAACCGATGGA--TCGAAACGATCAAGAATTACAGGAATAGTGAAATTAGAAGATG 599 Query 13575 CGAACAAGGCGGGTACGGCACAATCTGGAAAGTGTACTCTCATTGTCACAGAGGGTGATT 13634 | || || || || || | || ||| | | ||||| | || | || ||||| |||| Sbjct 600 CTAATAATGCTGGAACACGAAAAGCTGCAGATTGTACATTGATCTTAACCGAGGGGGATT 659 Query 13635 CGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTTGGTCGTGATCACTACGGTGTGT 13694 | || ||| || | || ||||| || | || || | ||||||||| | || || || | Sbjct 660 CAGCCAAATCCTTAGCAGTTGCTGGATTATCGGTTATCGGTCGTGATAATTATGGCGTTT 719 Query 13695 TCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACGCTTCGGTGGCACAGCTCACATCAA 13754 |||| ||| | |||||| | || || || || ||| | || || || || | Sbjct 720 TCCCGCTTAGGGGTAAACTTCTTAACGTCCGAGAAGCTAGTGGTGCTCAACTTCTCTCGA 779 Query 13755 AC-CAGGAGTTCAACGATCTCAAGAAGATCCTTGGTCTTCAACAAGGAAAAGACTAC-CA 13812 | | | | |||||| || |||| | ||| | ||||||||||| || ||| | ||| | Sbjct 780 ATGCTGAAATTCAAC-ATATCAAACAAATCATGGGTCTTCAACAGGGTAAAAAATACTCT 838 Query 13813 AG--ATGTTTCTGAACTTCGCTATGGTCGTCTTATGATTATGACAGAT 13858 || | |||| ||||| |||||| || | ||||| ||||| ||| Sbjct 839 AGTAGGGATTCT---CTTCGATATGGTAGTTTAATGATCATGACCGAT 883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596403992279040