Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq12085 114 3e-20 seq12087 111 3e-19 seq4594 111 3e-19 >seq12085 Length=636 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| ||| || | || ||||| | |||| |||||| || || || || Sbjct 224 ATTCCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCG 283 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || |||||||||||||| |||||||||| | |||||||| || Sbjct 284 GCAAGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGG 343 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || ||| ||| || ||| || | || |||||||| Sbjct 344 GGGATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCC 403 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 ||||| ||||| || || ||||| || Sbjct 404 ACTTCCAGAGTGATCGTCTTACCGGT 429 >seq12087 Length=1588 Score = 111 bits (122), Expect = 3e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||||| || | ||| ||||| | ||| || ||| || || || Sbjct 218 ATACCACCACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCG 277 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || ||||| || |||||||||||||| |||| |||||||||||| Sbjct 278 GCCAAGGTGCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGG 337 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || || || | || || || || Sbjct 338 GGAATACCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCG 397 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 || || ||||| ||||| || || || Sbjct 398 ACCTCAAGAGTGATGGTCTTGCCGGT 423 >seq4594 Length=2528 Score = 111 bits (122), Expect = 3e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||||| ||||| | || ||||| | || | ||| ||| || || || |||| Sbjct 1019 ATTCCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGA-ATGTTGTAATT 1077 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | || ||||| |||| || | ||| || ||||||||||||| | ||||||||| || Sbjct 1078 GGCCAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGG 1137 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| |||||||| |||||||| || || || || || || | || || ||||| Sbjct 1138 TGGGATTCCTTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGATGATTC 1197 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 || || | ||| |||||||| |||||||| Sbjct 1198 GACCTCCAAAGTGATGGTTTTGCCAGTTAA 1227 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || ||||| | |||| |||||| || || || || | | || || | || ||| Sbjct 1619 ACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCGTCCTCC 1678 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | ||||||||| ||||||||||| | |||||||| | || || ||||| || ||||| Sbjct 1679 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTCTTGG 1738 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || ||| |||||| || | || |||||||| ||||| ||||| || || ||| Sbjct 1739 ATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGAGTGATCGTCTTA 1798 Query 192508 CCAGT 192512 || || Sbjct 1799 CCGGT 1803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984199876060800