Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq17129 91.5 2e-13 seq17261 87.8 2e-12 >seq17129 Length=12200 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 193443 ATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGGTAT 193501 |||||||||| || |||||||| ||| || |||| | | || || ||| ||| || Sbjct 69 ATACCTGAAACTGGAGATAAATTCGCTTCTAGACATGGAC-AGAAGGGGACTGTTGGGAT 127 Query 193502 GATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTAT 193561 | ||| |||||||||||||||||| ||| || ||| || || ||||||||||| Sbjct 128 TCTGTATAGACAAGAAGATATGCCATTCACATCTGAAGGAATTTGTCCGGATATTATTAT 187 Query 193562 TAATCCAAATTGTATTCCATCCAGAATGACCATT 193595 ||||| || ||||||||| ||||||| ||| Sbjct 188 CAATCCTCATGCGATTCCATCCCGAATGACGATT 221 >seq17261 Length=6102 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 193842 GATAAAATGCATGCTAGAAGTCATGGA-CAAGTGACTACTTTACATCGACAACCAAATTG 193900 |||||||||||||| ||| | ||| |||| | ||| || || ||||||| Sbjct 2083 GATAAAATGCATGCAAGAGCACGAGGACCAAGAGCGGTCTTAAC-CCGTCAACCAACCGA 2141 Query 193901 TGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGT 193960 ||| | || || |||||| |||||||| ||||| ||||||| ||| ||| | | | Sbjct 2142 AGGTAGATCGAGAGATGGAGGATTAAGATTAGGAGAGATGGAGAGAGATTGTTTAATTGC 2201 Query 193961 TCATGGTGCTACTCAATTCTTGAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGT 194020 |||||| ||| ||||| ||||| |||||| | | || | ||||||| | || || | Sbjct 2202 TCATGGCGCTTCTCAACTCTTGTTGGAAAGACTCATGTTATCTTCTGATTCATTCGAATT 2261 Query 194021 CGATGTTTGCACAGAATGTGGT 194042 |||||||| || |||||| Sbjct 2262 AGATGTTTGTCAGGATTGTGGT 2283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635001274698240