Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq12086 107 2e-18 seq12087 89.7 5e-13 seq4594 86.0 6e-12 seq12084 84.2 2e-11 >seq12086 Length=376 Score = 107 bits (118), Expect = 2e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| |||||||| || || ||||| || | | ||| ||| |||||| || | Sbjct 50 ATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGTGCGACC-GTCCTCCAGTT 108 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || |||| | || |||||||| || ||||| ||||||||||| ||||| Sbjct 109 GCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCT 168 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | |||| ||||||| || ||| || || | ||||| |||||||||| Sbjct 169 TCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTGATCGTTTTGCCGG 228 Query 133636 TCA 133638 ||| Sbjct 229 TCA 231 >seq12087 Length=1588 Score = 89.7 bits (98), Expect = 5e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| ||| ||| ||| || | |||||| || Sbjct 251 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCCAACTGCTTACCA 310 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | ||||| || || || || || ||||||||||| ||||||| |||| Sbjct 311 GCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTTGTCTTGGATCTTTGCCTTG 370 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | | |||| ||||||| | ||| || || | |||| ||| |||||||| ||| Sbjct 371 ACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGA 427 >seq4594 Length=2528 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| |||||||| || || ||||| || | | ||| | |||||| || || Sbjct 2205 ATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGAGTGCAACCGTCCTCCAGTTG 2264 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || |||| | || |||||||| || || || ||||||||||| ||||| Sbjct 2265 CTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTT 2324 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | |||| ||||| | || ||| || || | | ||| |||||||| || Sbjct 2325 CGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAAGATGATCGTTTTGCCAGT 2384 Query 133637 CA 133638 || Sbjct 2385 CA 2386 >seq12084 Length=2187 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||| || ||||| || ||||| ||| || || | | | || ||||| Sbjct 1760 AAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCA-TCTTCGAG 1818 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| ||| ||||||| || ||||| || || ||||| ||||||||||| ||| Sbjct 1819 TTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTTGTC-TTGAA 1877 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | || | ||||| ||| || || || | ||||| || |||| Sbjct 1878 TTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGATCGTCTTGC 1937 Query 133633 CGGTCAG 133639 | || || Sbjct 1938 CTGTGAG 1944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483286602385920