Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5113 96.9 8e-15 >seq5113 Length=1121 Score = 96.9 bits (106), Expect = 8e-15 Identities = 163/229 (71%), Gaps = 14/229 (6%) Strand=Plus/Plus Query 279875 GATGGTTTGAAACCTTCACAGCGTAAG--ATTATATTCAGTTGTTTCAAAAGAAAATTGG 279932 |||||||| ||||| || ||||| ||||| | || ||||| |||||||||||| Sbjct 130 GATGGTTTCAAACCCGGTCAACGTAAAGTATTATTTGCA--TGTTTTAAAAGAAAATTG- 186 Query 279933 TAAAG--GAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCA 279990 |||| |||||| || || || |||| ||| ||| |||||||||| ||| ||||| Sbjct 187 -AAAGCTGAAATTAAAGTAGCACAATTAGGAGGATATTGTTCAGAACATTCAGCCTATCA 245 Query 279991 TCACGGTGAAGC--GTCTC-TTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGC 280047 ||| || ||||| ||||| |||| |||| || || | || ||| ||||| | | Sbjct 246 TCATGGAGAAGCAAGTCTCACTCAA---ACTATAGTCGGATTAGCTCAAAATTTTGTCGG 302 Query 280048 TTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGT 280096 || || | ||| | || ||||| ||||| ||||| ||| ||||| Sbjct 303 AAGTAATAATATTAATGTCCTCTCACCTAATGGCCAATTCGGTACTCGT 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186475104285888