Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq4594 102 7e-17 seq12084 98.7 9e-16 >seq4594 Length=2528 Score = 102 bits (112), Expect = 7e-17 Identities = 130/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 25209 CGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCG 25268 ||||||| ||||||| ||| | | || |||||||| | || || ||||| | Sbjct 917 CGATCACCCTCGAAGTTGAATCTAGTGACACTATCGATAACGTCAAGGCGAAAATCCAAG 858 Query 25269 ATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAG 25328 | || |||||||| || || ||||||||| | ||||||| || |||||| |||||||||| Sbjct 857 ACAAGGAGGGTATCCCACCTGATCAGCAACGTCTCATTTTCGCCGGCAAGCAACTCGAAG 798 Query 25329 ATGATAGAAA--TGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||| | | | |||| |||||||||||| || | |||| ||| |||| || || Sbjct 797 ATGGTCGTACCTTGTC--CGATTACAATATCCAGGAGAAATCAACCCTTCACTTGGT 743 >seq12084 Length=2187 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 25209 CGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCG 25268 ||||||| | ||||| ||| ||| || || ||||| | || ||| |||||| | Sbjct 1931 CGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACGTCAAAGCGAAAATTCAAG 1872 Query 25269 ATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAG 25328 | || || ||||| || || ||||||||| | ||||||| || |||||| |||||||||| Sbjct 1871 ACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGGCAAGCAACTCGAAG 1812 Query 25329 ATGATAGAA--ATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||| | | |||| ||| ||||| || || || ||||||||| | || || || Sbjct 1811 ATGGCCGTACCTTGTC--CGACTACAACATCCAGAAGGAATCCACCCTCCACTTGGT 1757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444970841794560