Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4594 127 2e-24 seq12087 125 7e-24 seq12085 122 9e-23 seq12086 118 1e-21 seq12084 96.9 4e-15 >seq4594 Length=2528 Score = 127 bits (140), Expect = 2e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||| |||||| | || | || || || || || || ||||||||||||||| Sbjct 1599 TTCCTCCTTGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGG 1658 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| | ||| || || ||||| || ||||| || ||||| || ||||| | | Sbjct 1659 CAAGGGTACGGCCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGG 1718 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || ||||| || || |||||| || | ||||| |||||||||| Sbjct 1719 GGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCA 1778 Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689 | || ||||| || || |||||||| Sbjct 1779 CTTCCAGAGTGATCGTCTTACCGGT 1803 Score = 109 bits (120), Expect = 6e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| ||| || | || | || || ||||| ||||| || |||||||||||| Sbjct 1307 TTCCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGG 1366 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | |||| || ||| || || ||||| || ||||| || | ||| || || || || | Sbjct 1367 CGAGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAG 1426 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||| || || ||||| || || ||||| ||| | || |||||||| || | Sbjct 1427 GAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAA 1486 Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689 | || | ||| ||||| || || || Sbjct 1487 CTTCCAAAGTGATGGTCTTTCCTGT 1511 Score = 105 bits (116), Expect = 7e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| |||| ||| || | || | || || ||||| ||||||||||||||||| | | Sbjct 1020 TTCCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGG 1079 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | || || || || || || || || ||||| || | |||||| ||||| || | Sbjct 1080 CCAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTG 1139 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || || ||||| ||| | ||||| || ||||| | Sbjct 1140 GGATTCCTTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGATGATTCGA 1199 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAA 134692 | || | ||| |||||||| || ||||| Sbjct 1200 CCTCCAAAGTGATGGTTTTGCCAGTTAA 1227 Score = 100 bits (110), Expect = 3e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | |||||| | || || || || || || || ||||| ||||||||||| Sbjct 2180 TTCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCG 2239 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| | ||| || || || || || |||||||||||||| ||||| || || | Sbjct 2240 CAAGAGTGCAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGG 2299 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || |||||||| || ||||| ||| | ||||| || || || | Sbjct 2300 GAATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGA 2359 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAA 134692 | || | | || ||||| || || || Sbjct 2360 CTTCCAAGATGATCGTTTTGCCAGTCAA 2387 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || || | || | ||| || || || ||||| ||||||||||| || || Sbjct 1887 CCACCTCGAAGACGGAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 1946 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || || || ||||| ||||| || | |||||| ||||| || || Sbjct 1947 AGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGA 2006 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || ||||| || || ||||| ||| | || ||||| || || || Sbjct 2007 ATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGGAGGACTCGACT 2066 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || || || ||||| || || || Sbjct 2067 TCAAGGGTGATGGTCTTTCCTGT 2089 >seq12087 Length=1588 Score = 125 bits (138), Expect = 7e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || |||||||| || | ||||| ||||| || |||||||||||| | | |||| | Sbjct 230 AGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGG 289 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | ||| || || ||||| ||||| ||||| ||||| || || || ||||| Sbjct 290 CCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCC 349 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || ||| ||||| ||| | |||||||| || || || || ||||| Sbjct 350 TTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTG 409 Query 134676 ATGGTTTTACCGGT 134689 ||||| || ||||| Sbjct 410 ATGGTCTTGCCGGT 423 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642 |||||||| || || || || || || || || || ||||||||||| ||||| | Sbjct 683 ATCAAACGTTGTTGGTCTGGAGGGATACCCTCCTTGTCTTGAATTTTAGCCTTGACGTTG 742 Query 134643 TCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || | ||||||||||| || || |||||||| |||||||||||||| Sbjct 743 TCGATGGTGTCGGACGACTCAACTTCGAGAGTGATGGTTTTACCGGT 789 >seq12085 Length=636 Score = 122 bits (134), Expect = 9e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| ||||| | || | || || || || || || ||||||||||||||| Sbjct 225 TTCCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGG 284 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| || ||| || | ||||| || ||||| || | ||| || ||||| || | Sbjct 285 CAAGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGG 344 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || || |||||| || | ||||| |||||||||| Sbjct 345 GGATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCA 404 Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689 | || ||||| || || |||||||| Sbjct 405 CTTCCAGAGTGATCGTCTTACCGGT 429 >seq12086 Length=376 Score = 118 bits (130), Expect = 1e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | |||||| | || || || || || || || ||||| ||||||||||| Sbjct 25 TTCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCG 84 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| |||| || ||| || || || || || |||||||||||||| ||||| || || | Sbjct 85 CAAGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGG 144 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || || ||||| ||| | |||||||| || || | Sbjct 145 GGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGA 204 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAA 134692 | || | || || ||||| ||||| || Sbjct 205 CTTCCAAGGTGATCGTTTTGCCGGTCAA 232 >seq12084 Length=2187 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || ||||||||||| || |||||||||||| Sbjct 1739 CCACCACGGAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1798 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || ||||| || ||||| || ||||| | ||| |||||||| || || Sbjct 1799 AAGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGG 1858 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||||||||| |||||| || | ||||| ||||| || Sbjct 1859 ATACCTTCCTTGTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACT 1918 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || || || || || || || || Sbjct 1919 TCAAGGGTGATCGTCTTGCCTGT 1941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505258101404160