Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq5954 89.7 8e-13 >seq5954 Length=8855 Score = 89.7 bits (98), Expect = 8e-13 Identities = 93/121 (77%), Gaps = 6/121 (5%) Strand=Plus/Plus Query 160976 GGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAGAAGGGGTATGAA 161035 ||||| ||||| || |||||||| |||||| ||||||| |||| | |||||||| ||| Sbjct 2419 GGTATCACTGGACAAGATGGATCTTATCTTACTGAACTCTTACTCGAAAAGGGGTACGAA 2478 Query 161036 GTCCATGGTATTATTCGTAGAACCTCCTCG---TTTAATACAGGAAGAATCGATCATATC 161092 || ||||| |||| ||| || ||| |||||||| ||||||||||| ||| || Sbjct 2479 GTACATGGACTTATC---AGACGTTCATCGAGTTTTAATACCGGAAGAATCGAACATCTC 2535 Query 161093 T 161093 | Sbjct 2536 T 2536 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 161560 AGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTGGGGTCATGC 161619 ||||| ||| || ||| ||||| |||| ||| | ||| |||||||||||| ||||| Sbjct 3251 AGGACAACAAGAATGTTTATACTTAGGAAATTTGTCAGCAAAACGAGATTGGGGCCATGC 3310 Query 161620 TGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGATGACTATGT 161679 |||| ||||| |||| ||||||| |||||||||||| || || ||||| | || Sbjct 3311 CAAAGATTATGTAGAGGGTATGTGGAAGATGTTACAACAAGATCAACCGGATGATTTCGT 3370 Query 161680 GATTGCCACAGGTAAA 161695 |||| || ||| || Sbjct 3371 ACTTGCTACTGGTGAA 3386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729726971543040