Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5113 178 4e-39 seq12085 161 3e-34 seq4594 147 7e-30 seq12084 125 2e-23 seq12086 114 4e-20 seq3561 114 4e-20 seq12087 111 5e-19 seq4248 107 6e-18 seq12540 93.3 1e-13 >seq5113 Length=1121 Score = 178 bits (196), Expect = 4e-39 Identities = 267/374 (71%), Gaps = 4/374 (1%) Strand=Plus/Plus Query 67896 TGAAATTAAAGTTGCACAATTTAGTGGTTATGTTTCAGAACATTCAGGCTATCATCACGG 67955 |||||||||||| |||||||| | || ||| |||||||||||||| ||||||||| || Sbjct 192 TGAAATTAAAGTAGCACAATTAGGAGGATATTGTTCAGAACATTCAGCCTATCATCATGG 251 Query 67956 TGAAGCTAGTTTAAATTCATCAATTGTAGGTTTAGCTCAGAATTTTGTTGGATCAAATAA 68015 ||||| ||| | | | | | || || || |||||||| |||||||| ||| ||||| Sbjct 252 AGAAGCAAGTCTCACTCAAACTATAGTCGGATTAGCTCAAAATTTTGTCGGAAGTAATAA 311 Query 68016 TATTAATTTACTAGAACCAAAAGGTCAATTTGGAACTAGATTACT-TGGAGGAAAAGATG 68074 ||||||| | || ||| || || ||||| || ||| | | || ||| || ||||||| Sbjct 312 TATTAATGTCCTCTCACCTAATGGCCAATTCGGTACTCG-TGCCTCTGGTGGTAAAGATG 370 Query 68075 CTGCATCTGAAAGATATATATTTACACATCTAAATACTTTAACTAGACTTATCTTTAGAC 68134 | || |||| ||| ||||| || || || || | | | |||||| | || || | Sbjct 371 CAGCTTCTGCAAGGTATATTTTCACTAATGTAGAAAAGATTACTAGAGTGATTTTCCCAG 430 Query 68135 AAGAAGATGATAATATTCTTGAA-TATTTAGAAGATGATGGTGATAAAGTTGAGCCAATC 68193 | ||||||||| |||| || |||||| ||||||||| || | ||||| Sbjct 431 CATCAGATGATAA-CGTCTTAAACTATTTAACGGATGATGGTACACAAATCGAGCCGGAA 489 Query 68194 TATTATGTTCCTATTATTCCTATGATTTTAGTAAATGGTTCAAAAGGGATTGGCACTGGA 68253 | ||| | || || | || ||| | |||| ||||| || | |||||||| |||||| Sbjct 490 TGGTATATCCCAATCTTACCGATGGTACTAGTGAATGGATCTAGTGGGATTGGAACTGGA 549 Query 68254 TTTAGTACAGATAT 68267 | ||| ||||||| Sbjct 550 TGGAGTTCAGATAT 563 >seq12085 Length=636 Score = 161 bits (178), Expect = 3e-34 Identities = 164/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || || || | || ||||| | |||||| ||||||||||| ||||| || | Sbjct 219 TTTGCATTCCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGT 278 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || ||||| | |||||| || ||||||||||||||||| |||| Sbjct 279 AGTCGGCAAGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGAT 338 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || |||||||| ||||| || || |||||||| || |||||||||| || || | Sbjct 339 CTGGGGGGATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACG 398 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 ||| ||||| || || | ||||| ||||| || Sbjct 399 ATTCCACTTCCAGAGTGATCGTCTTACCGGTGAG 432 Score = 95.1 bits (104), Expect = 4e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || |||||||| || ||||| || ||||| || | Sbjct 505 TTTGCATACCACCTCGGAGACGGAGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGT 564 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||||| | ||||| || ||||| ||||| || ||||||||||| || || || || | Sbjct 565 AATCAGCAAGAGTTCGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGT 624 Query 140623 CAGGAGGAAT 140632 | || ||||| Sbjct 625 CCGGGGGAAT 634 >seq4594 Length=2528 Score = 147 bits (162), Expect = 7e-30 Identities = 149/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | ||||| | |||||| || ||||| |||||||| || |||| Sbjct 1018 CATTCCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATT 1077 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || ||||| ||||| |||||||| |||||||||||||||||||| || ||||| || Sbjct 1078 GGCCAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGG 1137 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || |||||||| ||||| || || || || || || || ||||||| || |||| ||| Sbjct 1138 TGGGATTCCTTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGATGATTC 1197 Query 140687 AACTTC--AAGTG 140697 || || ||||| Sbjct 1198 GACCTCCAAAGTG 1210 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| | |||||| ||||||||||| ||||| || || || | | || || || || Sbjct 1616 AGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCGTCC 1675 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || |||||||| || |||||||||| |||||| ||||| | || || ||||| || || Sbjct 1676 TCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTCT 1735 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || ||||| ||||||||||||| || || | ||| ||||| || || | ||| Sbjct 1736 TGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGAGTGATCGTC 1795 Query 140706 TTTCCGGTTAG 140716 || ||||| || Sbjct 1796 TTACCGGTGAG 1806 Score = 122 bits (134), Expect = 3e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | || ||||| |||||||| || ||||||||||| || || | Sbjct 2174 TTTGCATTCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGT 2233 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || | || || || ||||| ||||| ||||| || | ||||||||| | Sbjct 2234 AGTCCGCAAGAGTGCAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGT 2293 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| ||||| || || ||||| || || || || || ||||| | ||||| | Sbjct 2294 CTGGGGGAATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGG 2353 Query 140683 GTTCAACTTC 140692 || ||||| Sbjct 2354 ACTCGACTTC 2363 Score = 120 bits (132), Expect = 9e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || | ||| || || ||||| || || || || || || | | || || || ||| Sbjct 1324 AGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCT 1383 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 |||||||||||||| |||||||| |||||||| || || |||||||| || || || || Sbjct 1384 TCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCT 1443 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || ||||| || || || ||||| | ||| || | |||||||| | || | ||| Sbjct 1444 TGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTGATGGTC 1503 Query 140706 TTTCCGGTTAG 140716 ||||| || || Sbjct 1504 TTTCCTGTGAG 1514 Score = 118 bits (130), Expect = 3e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | ||||| | ||||| || || | | || ||||| ||||| || Sbjct 724 ACCACCACGGAGACGGAGAACCAAGTGAAGGGTTGATTTCTCCTGGATATTGTAATCGGA 783 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || |||||||| ||||| || || || || || ||||||||||||||||| || Sbjct 784 CAAGGTACGACCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGTGG 843 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || || || ||||| || || || ||||| || | ||| | |||||| Sbjct 844 GATACCCTCCTTGTCTTGGATTTTCGCCTTGACGTTATCGATAGTGTCACTAGATTCAAC 903 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 ||| || || | ||||| || || ||| Sbjct 904 TTCGAGGGTGATCGTCTTGCCTGTAAGT 931 >seq12084 Length=2187 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || || || || || || || || || || Sbjct 1738 ACCACCACGGAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 1797 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || |||||||| ||||| || || || || || ||||||||||||||||| || Sbjct 1798 CAAGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGG 1857 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || ||||| || || |||||||| ||||| || ||||| || | ||| | |||||| Sbjct 1858 GATACCTTCCTTGTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAAC 1917 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAG 140716 |||||| || | ||||| || || || Sbjct 1918 TTCAAGGGTGATCGTCTTGCCTGTGAG 1944 >seq12086 Length=376 Score = 114 bits (126), Expect = 4e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | || ||||| |||||||| || ||||||||||| || || | Sbjct 19 TTTGCATTCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGT 78 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || || || ||||| ||||| ||||| || | ||||||||| | Sbjct 79 AGTCCGCAAGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGT 138 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || ||||| || || || || || || || || || ||||| | || || | Sbjct 139 CTGGGGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGG 198 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || ||||| | || | || || ||||| Sbjct 199 ACTCGACTTCCAAGGTGATCGTTTTGCCGGT 229 >seq3561 Length=13642 Score = 114 bits (126), Expect = 4e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | ||||| || || || || |||| ||| |||||||||||||| || || Sbjct 4180 GGTATTGATCTCGGTACCACCTACTCCTGCGTTGGTGTATGGCAAAATGATCGAGTTGAG 4239 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || ||||| || || ||||| || ||||||| || || |||||||| || ||||| | Sbjct 4240 ATCATTGCCAACGACCAAGGAAATCGAACAACTCCTTCCTACGTTGCTTTCACCGACTCA 4299 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 || ||| |||| |||||| | || || || |||| || || || | | || || Sbjct 4300 GAACGTCTGATCGGTGATGCCGCCAAGAACCAAGTCGCCATGAACCCTCACCACACCGTC 4359 Query 349385 TTTGATGCTAAGCGACTTATTGG 349407 || ||||| ||||| || || || Sbjct 4360 TTCGATGCCAAGCGTCTGATAGG 4382 >seq12087 Length=1588 Score = 111 bits (122), Expect = 5e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || ||||| | ||| ||||| || || || || | Sbjct 213 TTTGCATACCACCACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGT 272 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || || || ||||| | || || ||||||||||| | || || |||| Sbjct 273 AGTCGGCCAAGGTGCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGAT 332 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| ||||| || || || || || || || || || ||||| | || || | Sbjct 333 CAGGGGGAATACCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAG 392 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || || ||||| || | ||||| ||||| || Sbjct 393 ACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAG 426 >seq4248 Length=17287 Score = 107 bits (118), Expect = 6e-18 Identities = 180/260 (69%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 349634 TTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTT 349693 || || || || |||||| || || || ||||| || | ||||| || | || || Sbjct 14782 TTCAACGACGCTCAGCGTCAAGCTACCAAGGATGCCGGTACGATTGCCGGACTTAACGTA 14841 Query 349694 CTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGT 349753 || |||| | || ||||| ||||| ||||| ||||| || || || |||| || || Sbjct 14842 CTCCGAATTGTCAACGAACCAACTGCCGCAGCGATTGCCTACGGACTGGATAGAACGAAG 14901 Query 349754 GACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTA 349813 | ||| | | || || | | ||| |||| ||||| ||||| ||||| |||||| Sbjct 14902 GG---AGAGCACCAAATCATTGTATACGATCTAGGAGGTGGAACTTTCGATGTCTCACTA 14958 Query 349814 CTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGT 349873 ||| | | || ||||| | ||||| || || || |||||||| || || | || Sbjct 14959 CTATCGATCGATGAGGGTGTCTTTGAGGTCTTGGCTACCGCTGGTGACACTCACTTGGGA 15018 Query 349874 GGAGAAGATTTTGATAATCG 349893 ||||||||||| ||||| || Sbjct 15019 GGAGAAGATTTCGATAACCG 15038 >seq12540 Length=11507 Score = 93.3 bits (102), Expect = 1e-13 Identities = 222/330 (67%), Gaps = 12/330 (4%) Strand=Plus/Plus Query 378183 ATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGT 378242 ||||||| | ||||| | |||||| | || || | || || || || ||||| || Sbjct 4118 ATCATATGTGACCATGACATCTTCAAGAGCCTTCAAGAGACGACGCTGGATGTAACCGGT 4177 Query 378243 TTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAA 378302 | || || |||||||||||||| ||||| | ||||| |||| || ||||| || Sbjct 4178 CTCGGCGGTCTTGACTGCAGTATCAATCAAACCCTCTCGACCTGCCATAGCGTGGAAAAA 4237 Query 378303 TAATTC-AGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTG 378361 || || || || |||| || | | | ||| | || | ||||| | | | | Sbjct 4238 GAACTCTTGTGGGGTTAAG-CCTCGTAAGTACGAATTTTCGACGAATCCCCGAGATTCGG 4296 Query 378362 GCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTC 378421 |||||| ||||| || || |||| || | || |||| || || || || ||||| | Sbjct 4297 GCGAATAATCATCCTTAGTGAAATGGGGCAGAGTTCGATACTTGAAGCCGTAGGGAATAC 4356 Query 378422 GTTTTCCATCAACATTCTGTTGACCAA---GTGCAGAAACCATTTGAGCAATATT--TAA 378476 |||| || || ||| ||||||||||| ||| || ||| |||| || || | | Sbjct 4357 GTTTCCCTTCCACAGACTGTTGACCAACGCATGCCGA---CATCTGAGAGATGTTGATGA 4413 Query 378477 ATCACTACCTTTAGACCCAGCATTAACCAT 378506 || | ||||||||| ||||| | ||||| Sbjct 4414 ATGA--ACCTTTAGAACCAGCTGTGACCAT 4441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514823249513024