Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq10000 91.5 2e-13 >seq10000 Length=7706 Score = 91.5 bits (100), Expect = 2e-13 Identities = 215/321 (67%), Gaps = 8/321 (2%) Strand=Plus/Plus Query 19844 AAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATG 19903 || || |||||||||||| | || | ||||| || |||||||| ||||| || || || Sbjct 5103 AAATCCAATCAGAAGAACCTTGGAACCATCAAATCATCCAACCTCTGTACCGAGATTATC 5162 Query 19904 GAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTG-CCGAC 19962 || ||| || ||||| || || |||||| |||| || | ||||| || || Sbjct 5163 GAATACTCCGCCCCTGACGAAGTCGCAGTTTGTAATTTGGCCTCGAT-TGCCTTACCAAC 5221 Query 19963 TT---TCGTCAAGGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGT 20019 || ||||| | | | | | ||||| |||| | | ||||| ||| || || Sbjct 5222 TTATATCGTCGATGGCAAATAC---GACTTCCACAAACTTCATGAGGTCACCAAGGAAGT 5278 Query 20020 CACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAA 20079 ||| ||||||||||| | ||||| || | ||||||| | | |||| | || Sbjct 5279 CACCTACAATCTGAATCGAATTATCGACATCAATTACTACCCGATCCCAGAGGCGAGGAA 5338 Query 20080 GTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCAT 20139 |||||| ||| | || || ||||| | ||||| || || || || || |||| |||| Sbjct 5339 GTCGAACATGAGACATCGTCCGATTGGTATCGGAGTACAAGGACTTGCTGACGCTTTCCA 5398 Query 20140 GATGCTCGGCCTCTCATTCGA 20160 || ||| || ||||||| Sbjct 5399 AATCCTCAAGCTACCATTCGA 5419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548372529515520