Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq12087 147 2e-30 seq4594 143 3e-29 seq12084 141 1e-28 seq12086 134 2e-26 seq12085 100 3e-16 seq2022 89.7 6e-13 >seq12087 Length=1588 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||||||||| || ||||||||||| ||||| || | ||||| || | ||| Sbjct 426 CTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATTGACAACGTCAAG 367 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || || |||||||| || ||||| || || || ||||| | || ||||||||| Sbjct 366 GCAAAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAACAGCGATTGATCTTTGCTGGT 307 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| | || || | || ||| | || ||||| || |||| ||||| |||||| | Sbjct 306 AAGCAGTTGGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCCACTTTG 247 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || || |||||||| ||||| Sbjct 246 CATCTCGTGTTACGTCTTCGTGGTGG 221 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||| || || || ||||| || |||||||| || | ||| | || | ||| Sbjct 792 CTTACCGGTAAAACCATCACTCTCGAAGTTGAGTCGTCCGACACCATCGACAACGTCAAG 733 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 ||||||||||| ||||||||||| || ||||||||||| || ||| Sbjct 732 GCTAAAATTCAAGACAAGGAGGGTATCCCTCCAGACCAACAACGT 688 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || ||||| || || || || ||||||||||| || | |||| || | ||||| Sbjct 136 ACTGGCAAAACCATCACCCTAGAGGTTGAGTCCTCGGACACGATTGACAACGTCAAGGCC 77 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || || |||||||| || || |||||||| || ||||| || ||||| ||||| Sbjct 76 AAGATCCAAGATAAGGAGGGCATCCCGCCAGACCAACAACGTCTTATCTTTGCCGGTAAA 17 Query 27550 CAACTCGAGGATG 27562 || || || |||| Sbjct 16 CAGCTGGAAGATG 4 >seq4594 Length=2528 Score = 143 bits (158), Expect = 3e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| || ||| | || |||||||| |||| |||| || | ||| Sbjct 1514 CTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACGTCAAG 1455 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 ||||| || || ||||||||||| |||||||||||||| || ||||| || ||||| || Sbjct 1454 GCTAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGTCTCATCTTTGCCGGA 1395 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 || ||||| || || | ||| ||||| || ||||| || |||| ||||| ||||| || Sbjct 1394 AAACAACTTGAAGACGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACACTC 1335 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||| | ||| | ||||| || || ||| Sbjct 1334 CATTTGGTCCTCCGTCTCCGAGGAGGA 1308 Score = 132 bits (146), Expect = 5e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| |||||||| || || || || ||||| || |||| | || | || | ||| Sbjct 930 CTTACAGGCAAGACGATCACCCTCGAAGTTGAATCTAGTGACACTATCGATAACGTCAAG 871 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || ||||| || ||||||||||| || || || || ||||| ||||| ||||| || || Sbjct 870 GCGAAAATCCAAGACAAGGAGGGTATCCCACCTGATCAGCAACGTCTCATTTTCGCCGGC 811 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||||||||| |||| ||||||| | | || || ||| |||| || |||| || ||| Sbjct 810 AAGCAACTCGAAGATGGTCGTACCTTGTCCGATTACAATATCCAGGAGAAATCAACCCTT 751 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || | ||||| || ||||| Sbjct 750 CACTTGGTTCTCCGTCTCCGTGGTGG 725 Score = 132 bits (146), Expect = 5e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTG-AGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGC 27488 || ||||| || || | ||||| | || ||||| ||| | ||||| || | ||||| Sbjct 2384 ACTGGCAAAACGATCA-TCTTGGAAGTCGAGTCCTCTGACACCATTGACAACGTCAAGGC 2326 Query 27489 TAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAA 27548 || ||||| |||||||| || ||||| ||||||||||| ||| | |||||||| || || Sbjct 2325 GAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAA 2266 Query 27549 GCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 |||||| ||||| | | | || || || ||||| || ||||||| || || || ||||| Sbjct 2265 GCAACTGGAGGACGGTTGCACTCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCA 2206 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||| || | || || || |||||| Sbjct 2205 TCTGGTTCTCCGACTCCGTGGTGGA 2181 Score = 125 bits (138), Expect = 8e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || ||||| || || ||| | ||||| || ||| || | |||| || | ||||| Sbjct 1224 ACTGGCAAAACCATCACTTTGGAGGTCGAATCATCGGACACGATTGACAACGTCAAGGCC 1165 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || || ||||| ||||| || || || || ||||||||||| |||||||| ||| Sbjct 1164 AAGATCCAAGATAAGGAAGGAATCCCACCGGATCAACAGCGTCTAATCTTTGCTGGAAAG 1105 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| ||||||| ||| || | || | || || | |||||||| ||||| |||||| Sbjct 1104 CAACTTGAGGATGGTCGAACTTTGGCCAATTACAACATTCAAAAGGAGTCCACCCTTCAT 1045 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633 | || | ||||| || |||||| Sbjct 1044 TTGGTTCTCCGTCTCCGAGGTGGA 1021 >seq12084 Length=2187 Score = 141 bits (156), Expect = 1e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || |||||||| || || ||||| ||||| || |||| | ||| | || | || Sbjct 1944 CTCACAGGCAAGACGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACGTCAAA 1885 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || |||||||| |||||||| || || || || || ||||| ||||| ||||| || || Sbjct 1884 GCGAAAATTCAAGACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGGC 1825 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||||||||| |||| |||||| | | ||||| || |||| ||||||||||| || Sbjct 1824 AAGCAACTCGAAGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTC 1765 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | ||| | ||||| || ||||| Sbjct 1764 CACTTGGTCCTCCGTCTCCGTGGTGG 1739 Score = 131 bits (144), Expect = 2e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || || |||||||| ||||| ||||| || || |||||| |||| ||||| Sbjct 2183 AAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCC 2124 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||||||||| |||| ||| || || || || || || |||||||||| |||||| Sbjct 2123 GGAAAGCAACTCGAAGATGGTCGAACTCTGGCCGATTACAACATCCAAAAGGAGTCCACT 2064 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||| || || | ||||| || |||||| Sbjct 2063 CTTCACCTGGTTCTCCGTCTCCGAGGTGGA 2034 >seq12086 Length=376 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 |||||||| || || || | || || ||||| || | ||||| || | ||||| Sbjct 229 ACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGACAACGTCAAGGCG 170 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || |||||||| || || || ||||||||||| ||| | |||||||| || ||| Sbjct 169 AAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAAG 110 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| ||||| | ||| ||||| || ||||| || ||||||| || || || |||||| Sbjct 109 CAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCAT 50 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633 || || | || || || |||||| Sbjct 49 CTGGTTCTCCGACTCCGTGGTGGA 26 >seq12085 Length=636 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| || ||| | || |||||||| |||| |||| || | ||| Sbjct 140 CTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACGTCAAG 81 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || || |||||||| ||||| ||||| || || |||||| |||| ||||| || Sbjct 80 GCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGGA 21 Query 27547 AAGCAACTCGAGGATGATCG 27566 ||||||||||| |||| ||| Sbjct 20 AAGCAACTCGAAGATGGTCG 1 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 ||||| || ||||| ||||| || || |||||||| ||||||||||| || | || || Sbjct 634 ATTCCCCCGGACCAACAGCGCCTTATCTTTGCTGGCAAGCAACTCGAAGACGGCCGAACT 575 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || || || || || | || ||||| ||||| |||||||||||| | ||||| || ||| Sbjct 574 CTTGCTGATTACAACATTCAGAAGGAGTCCACCCTTCATCTAGTCCTCCGTCTCCGAGGT 515 Query 27631 GG 27632 || Sbjct 514 GG 513 >seq2022 Length=9689 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 27541 GCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCC 27600 ||||||||||||||||| || | || ||| | || ||||| || |||||||||| ||| Sbjct 742 GCTGGTAAGCAACTCGAAGACGGCCGAACCTTGGCCGACTACAACATCCAAAAGGAGTCC 801 Query 27601 ACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| | |||||||||||||| ||||| Sbjct 802 ACCCTTCACTTGGTCTTGCGTCTTCGTGGTGG 833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570152081832960