Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq12085 122 5e-23 seq12084 118 7e-22 seq4594 114 8e-21 >seq12085 Length=636 Score = 122 bits (134), Expect = 5e-23 Identities = 153/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| || | |||||||| || || ||| || |||||||| || || | | Sbjct 227 CCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCA 286 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||||||||||||||| |||| ||| ||||| || || || Sbjct 287 AGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGG 346 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGT-CTTCGCTCTCCA 34657 | ||| ||||| ||| |||| || | ||| ||| || ||| |||| | || | |||| Sbjct 347 ATTCCTTCCTTATCTTGGATC-TTAGCTTTGACGTTATCAATCGTGTCCGACGAT-TCCA 404 Query 34658 CTTCCACGGTTATCGTTTTACCGGT 34682 |||||| || ||||| |||||||| Sbjct 405 CTTCCAGAGTGATCGTCTTACCGGT 429 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | || | ||| || ||| |||||| |||||||| ||||| | | Sbjct 513 CCACCTCGGAGACGGAGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCA 572 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || ||||| ||||||| ||||| || || ||||| || | |||||||||||||| || Sbjct 573 AGAGTTCGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCCGGGGG 631 >seq12084 Length=2187 Score = 118 bits (130), Expect = 7e-22 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | |||| || |||||| ||||||||| ||||| ||||| | Sbjct 2035 CCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCC 2094 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | ||||| ||||| || |||||||| |||||||||||||| ||||| || Sbjct 2095 AGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGG 2154 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||| ||||||||| |||||| Sbjct 2155 ATTCCTTCCTTGTCTTGGATCTT 2177 >seq4594 Length=2528 Score = 114 bits (126), Expect = 8e-21 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | ||||||||||| ||| |||||| || ||||| || || | Sbjct 1309 CCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCG 1368 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||||||||||||||| |||||||| || | ||| |||||||| || || Sbjct 1369 AGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGA 1428 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | |||||||||||| |||||| Sbjct 1429 ATGCCCTCCTTGTCTTGGATCTT 1451 Score = 111 bits (122), Expect = 1e-19 Identities = 140/187 (75%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| || || ||| || |||||||| || || | ||| || || |||| || Sbjct 1619 ACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCGTCCTCC 1678 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||||||||||||||| |||||||| ||||| || | || | || ||||||||| | Sbjct 1679 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTCTTGG 1738 Query 34618 ATCTTTTGTTTTAACGATA-AAATTGTGT-CTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 ||| || | ||| || || ||| |||| | || | |||||||||| || ||||| | Sbjct 1739 ATC-TTGGCTTTGACATTATCAATCGTGTCCGACGAT-TCCACTTCCAGAGTGATCGTCT 1796 Query 34676 TACCGGT 34682 ||||||| Sbjct 1797 TACCGGT 1803 Score = 105 bits (116), Expect = 4e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | |||||||| || ||| ||||||||||||||| |||| | Sbjct 1022 CCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGCC 1081 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | || |||||||| || || ||||| |||| ||||||||| ||||| || Sbjct 1082 AAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGG 1141 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||| ||||| ||| |||||| Sbjct 1142 ATTCCTTCCTTATCTTGGATCTT 1164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314644415286464