Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq12087 93.3 3e-14 seq12086 89.7 4e-13 seq4594 87.8 1e-12 >seq12087 Length=1588 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| |||| || || || || || || ||||| || || || ||||| Sbjct 354 GACAAGGAAGGTATTCCCCCTGATCAACAGCGATTGATCTTTGCTGGTAAGCAGTTGGAA 295 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| |||| |||| |||| ||||||||||| || ||| |||||||||| | || || Sbjct 294 GACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCCACTTTGCATCTCGTGTTA 235 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 234 CGTCTTCGTGGTGG 221 >seq12086 Length=376 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| | || || |||||||| || |||||||||||||| ||| |||| Sbjct 160 GACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAAGCAACTGGAG 101 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| |||| | | | || |||||||||||||||||| || | ||| ||||| | Sbjct 100 GACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCATCTGGTTCTC 41 Query 28003 CGTTTGCGTGGCGG 28016 || | ||||| || Sbjct 40 CGACTCCGTGGTGG 27 >seq4594 Length=2528 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| |||| || |||||||| || |||||||||||||| ||| |||| Sbjct 2315 GACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAAGCAACTGGAG 2256 Query 27943 GACGAACGCAG-CTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 |||| ||| |||| | || |||||||||||||||||| || | ||| ||||| | Sbjct 2255 GACGGTTGCACTCTTG-CGGACTACAACATCCAAAAAGAGTCGACCCTTCATCTGGTTCT 2197 Query 28002 GCGTTTGCGTGGCGG 28016 || | ||||| || Sbjct 2196 CCGACTCCGTGGTGG 2182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355766082282816