Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01]
22,208 sequences; 65,184,451 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq12085 145 2e-29
seq12087 143 6e-29
seq12084 141 2e-28
seq12086 136 9e-27
seq4594 132 1e-25
>seq12085
Length=636
Score = 145 bits (160), Expect = 2e-29
Identities = 152/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||||| || || | ||||| || |||||||| || ||||| || || ||||||||
Sbjct 233 CGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTA 292
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || ||||||| || || || || ||||| || |||||||| || || || | ||||
Sbjct 293 CGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGGATTCCT 352
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||| || |||||||| ||| ||||| || || ||||| || ||| || || |||
Sbjct 353 TCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACTTCCAGA 412
Query 211074 GTGATCGTCTTTCCCGTGAG 211093
||||||||||| || |||||
Sbjct 413 GTGATCGTCTTACCGGTGAG 432
Score = 102 bits (112), Expect = 2e-16
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || ||||| |||||||| || || ||||| ||||| ||||| || | || |||
Sbjct 528 AGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCGGCCGTCT 587
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008
|| || |||||||| || ||||||||||| |||||||| || ||||
Sbjct 588 TCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCCGGGGGAA 633
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016
|||||||| || ||||| || || ||||| | || ||||| || ||||| | |||||||
Sbjct 4 CCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTCC 63
Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076
||||| |||||||| || ||||| || || || || || ||||| || | ||||
Sbjct 64 TTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTG 123
Query 211077 ATCGTCTTTCCCGTGAG 211093
|| |||||||| |||||
Sbjct 124 ATGGTCTTTCCTGTGAG 140
>seq12087
Length=1588
Score = 143 bits (158), Expect = 6e-29
Identities = 153/202 (76%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || || || | ||||||||| || |||||||| || || || | |||
Sbjct 226 ACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGT 285
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || ||||||| |||||| || || ||||| | || ||||| ||||| |||| ||
Sbjct 286 GCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACC 345
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||| ||||||||| || ||||| || |||||||| || || ||||| ||
Sbjct 346 TTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAG 405
Query 211073 AGTGATCGTCTTTCCCGTGAGA 211094
|||||| ||||| || || |||
Sbjct 406 AGTGATGGTCTTGCCGGTAAGA 427
Score = 102 bits (112), Expect = 2e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016
|||||||||||||| || || || |||||||| ||||||||||| || || | || |||
Sbjct 3 CCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGCGGGATGCCCTCC 62
Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076
|| || |||||||| || ||||| || || ||||| ||| |||||||| || |||
Sbjct 63 TTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGGACTCAACCTCTAGGGTG 122
Query 211077 ATCGTCTTTCCCGT 211090
|| || || || ||
Sbjct 123 ATGGTTTTGCCAGT 136
>seq12084
Length=2187
Score = 141 bits (156), Expect = 2e-28
Identities = 146/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| || ||||| || || |||||||| || || | | ||| | ||||||
Sbjct 1754 AGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCT 1813
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| ||||| || || ||||| || ||||| || | |||||||||||
Sbjct 1814 TCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTTGTCT 1873
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| || || ||| ||||| |||||||||||| | |||||| || || |||||||||
Sbjct 1874 TGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGATCGTC 1933
Query 211083 TTTCCCGTGAG 211093
|| || |||||
Sbjct 1934 TTGCCTGTGAG 1944
Score = 123 bits (136), Expect = 6e-23
Identities = 104/128 (81%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||||||||||||||| ||||||||||| ||||| || || || | ||||||
Sbjct 2050 AGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCCAGAGTTCGACCATCT 2109
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||| || || ||||| | || ||||| || ||||| | ||||||||||||
Sbjct 2110 TCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCT 2169
Query 211023 TGGATCTT 211030
||||||||
Sbjct 2170 TGGATCTT 2177
>seq12086
Length=376
Score = 136 bits (150), Expect = 9e-27
Identities = 149/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||| |||| || || || ||||| || ||||||||||||||||| || |||||||||||
Sbjct 32 ACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGT 91
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || ||||| ||||| || || || || | ||||| ||||| || || | ||
Sbjct 92 GCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGGATACC 151
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||| |||||||| || ||||| || |||||||| ||| || || || |
Sbjct 152 TTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCCAA 211
Query 211073 AGTGATCGTCTTTCCCGT 211090
|||||||| || || ||
Sbjct 212 GGTGATCGTTTTGCCGGT 229
>seq4594
Length=2528
Score = 132 bits (146), Expect = 1e-25
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | || || |||||||| || |||||||| || || || ||||| | || |||
Sbjct 1324 AGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCT 1383
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || || || || || ||||| || ||||||||||| ||||||| || ||||||||
Sbjct 1384 TCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCT 1443
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| || || || || || ||||| || | |||||| |||
Sbjct 1444 TGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTGATGGTC 1503
Query 211083 TTTCCCGTGAG 211093
||||| |||||
Sbjct 1504 TTTCCTGTGAG 1514
Score = 132 bits (146), Expect = 1e-25
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||| |||| || || || ||||| || ||||||||||||||||| || |||||||| ||
Sbjct 2187 ACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGAGT 2246
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || ||||| ||||| || || || || | ||||| ||||| || |||| ||
Sbjct 2247 GCAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACC 2306
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||| || ||||| || ||||| || |||||||||||| || || || |
Sbjct 2307 TTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAA 2366
Query 211073 AGTGATCGTCTTTCCCGT 211090
||||||| || || ||
Sbjct 2367 GATGATCGTTTTGCCAGT 2384
Score = 125 bits (138), Expect = 2e-23
Identities = 137/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
||||| || |||||||| || ||||| || || |||||||| | || || ||||| ||
Sbjct 1625 TGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCGTCCTCCAGTTGT 1684
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || || ||||| | |||||||| || | || | ||||||||||| ||||||||
Sbjct 1685 TTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTCTTGGATCTTG 1744
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
||| || || || || ||||| || ||| || || |||||||||||||| || |||
Sbjct 1745 GCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGAGTGATCGTCTTACCGGTG 1804
Query 211092 AG 211093
||
Sbjct 1805 AG 1806
Score = 114 bits (126), Expect = 3e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | |||||| || || | | ||||| || ||||| | | ||| | ||||||
Sbjct 740 AGAACCAAGTGAAGGGTTGATTTCTCCTGGATATTGTAATCGGACAAGGTACGACCATCT 799
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| ||||| || || ||||| || ||||| || | || ||||||||
Sbjct 800 TCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGTGGGATACCCTCCTTGTCT 859
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || || ||||| ||||| |||||| |||||| ||||| |||||||||
Sbjct 860 TGGATTTTCGCCTTGACGTTATCGATAGTGTCACTAGATTCAACTTCGAGGGTGATCGTC 919
Query 211083 TTTCCCGTGAG 211093
|| || || ||
Sbjct 920 TTGCCTGTAAG 930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158822174889920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |