Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4594 131 1e-25 seq12085 127 1e-24 seq12087 104 2e-17 seq12086 102 6e-17 seq12084 102 6e-17 >seq4594 Length=2528 Score = 131 bits (144), Expect = 1e-25 Identities = 156/209 (75%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAA 23689 |||||| || || ||||||||||| ||||| || || ||||||| |||| ||| | || Sbjct 1807 CCTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAATGTCAA 1748 Query 23690 AACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCG 23749 | | || | | ||||| ||||| | || |||||||||| |||||||| ||||||| Sbjct 1747 AGCCAAGA-TCCAAGACAAGGAAGGCATCCCCACAGATCAACAACGTTTAATCTTTGCCG 1689 Query 23750 GCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACAT 23809 | ||||||||||| |||| || || | | ||| |||||||| || |||||||| || Sbjct 1688 GTAAACAACTGGAGGACGGCCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCC 1629 Query 23810 TACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | ||||| ||| | | | | ||||||| Sbjct 1628 TTCATTTGGTTCTCCGACTCCAAGGAGGA 1600 Score = 102 bits (112), Expect = 6e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || |||||||||| | ||||| || ||| | ||||| |||| | | || Sbjct 2384 ACTGGCAAAACGATCATCTTGGAAGTCGAGTCCTCTGACACCATTGACAACGTCAAGGCG 2325 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 || ||| ||||| |||||| | || ||||| || || ||||| || |||||||| || Sbjct 2324 AAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAAG 2265 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 |||||||| |||| ||||| | | || |||||||| ||||||||||| || | ||| Sbjct 2264 CAACTGGAGGACGGTTGCACTCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCAT 2205 Query 23815 TTAGTT 23820 | ||| Sbjct 2204 CTGGTT 2199 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || ||||| |||||| | || || || || ||||||| |||| | | || Sbjct 1224 ACTGGCAAAACCATCACTTTGGAGGTCGAATCATCGGACACGATTGACAACGTCAAGGCC 1165 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 || || || || ||||| | || || |||||||||||| |||| ||||| || || Sbjct 1164 AAGATCCAAGATAAGGAAGGAATCCCACCGGATCAACAGCGTCTAATCTTTGCTGGAAAG 1105 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 ||||| || || | || ||||| | | |||||||||| ||||| |||||||| | ||| Sbjct 1104 CAACTTGAGGATGGTCGAACTTTGGCCAATTACAACATTCAAAAGGAGTCCACCCTTCAT 1045 Query 23815 TTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||| | | | ||||| ||| Sbjct 1044 TTGGTTCTCCGTCTCCGAGGTGGA 1021 Score = 84.2 bits (92), Expect = 1e-11 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAA 23689 ||| || ||||| || ||||| || ||||| || ||| | || || | || ||| | || Sbjct 2093 CCTTACAGGAAAGACCATCACCCTTGAAGTCGAGTCCTCCGATACCATCGACAATGTCAA 2034 Query 23690 AACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCG 23749 | || | | || || || || | || || |||||||||||| | || ||||||| Sbjct 2033 GGCCAAGA-TCCAAGATAAGGAGGGCATTCCCCCGGATCAACAGCGTCTTATCTTTGCCG 1975 Query 23750 GCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACAT 23809 |||| ||||| || |||| || || | | ||||||||||| || || ||||| || Sbjct 1974 GCAAGCAACTTGAGGACGGCCGAACCCTTGCTGATTACAACATTCAGAAGGAGTCTACCC 1915 Query 23810 TACATTTAGT 23819 | || ||||| Sbjct 1914 TTCACTTAGT 1905 >seq12085 Length=636 Score = 127 bits (140), Expect = 1e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAA 23690 |||||| || || ||||||||||| ||||| || || ||||||| |||| | | || Sbjct 433 CCTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAACGTCAA 374 Query 23691 ACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGG 23750 | || || || || ||||| | || ||||||||||| ||| |||| |||||||| Sbjct 373 AGCTAAGATCCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTCTAATCTTTGCCGG 314 Query 23751 CAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATT 23810 |||||| ||||||||| || || | | ||| |||||||| || |||||||| || | Sbjct 313 TAAACAATTGGAAGACGGTCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCT 254 Query 23811 ACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| ||| | | | ||||||||| Sbjct 253 TCATTTGGTTCTCCGACTTCGAGGAGGA 226 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAA 23690 |||||| ||||| || |||||| | |||||||| || | || ||| |||| | | || Sbjct 141 CCTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACGTCAA 82 Query 23691 ACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGG 23750 || || ||||| ||||| | || || ||||||||||||||||| |||||||| Sbjct 81 GGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGG 22 Query 23751 CAAACAACTGGAAGA 23765 || ||||| ||||| Sbjct 21 AAAGCAACTCGAAGA 7 >seq12087 Length=1588 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23632 CTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAA 23691 || || || || || |||||||| || || || || | ||||| |||| | | || Sbjct 426 CTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATTGACAACGTCAAG 367 Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751 ||| || ||||| |||||| | || || ||||||||||| || || ||||| || Sbjct 366 GCAAAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAACAGCGATTGATCTTTGCTGGT 307 Query 23752 AAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTA 23811 || || ||||||||| ||||| || | ||| |||||||| || || |||||||| || Sbjct 306 AAGCAGTTGGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCCACTTTG 247 Query 23812 CATTTAGTTTTA 23823 ||| | || ||| Sbjct 246 CATCTCGTGTTA 235 >seq12086 Length=376 Score = 102 bits (112), Expect = 6e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || ||||||||||| | ||||| || ||| | ||||| |||| | | || Sbjct 229 ACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGACAACGTCAAGGCG 170 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 || || ||||| |||||| | || ||||| || || ||||| || |||||||| || Sbjct 169 AAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAAG 110 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 |||||||| |||| ||||| | | || |||||||| ||||||||||| || | ||| Sbjct 109 CAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCAT 50 Query 23815 TTAGTT 23820 | ||| Sbjct 49 CTGGTT 44 >seq12084 Length=2187 Score = 102 bits (112), Expect = 6e-17 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || || ||||||||||||||||| |||||||| || ||||| ||| Sbjct 2168 GACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGGAAAGCAACTCGAA 2109 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 || | || ||| | | |||||||||||| ||||| |||||||| Sbjct 2108 GATGGTCGAACTCTGGCCGATTACAACATCCAAAAGGAGTCCAC 2065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337918114321664