Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq12087 136 9e-27 seq12084 136 9e-27 seq4594 125 2e-23 seq12086 123 6e-23 seq20376 100 7e-16 seq12085 98.7 2e-15 seq4595 84.2 5e-11 >seq12087 Length=1588 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | || || || | |||||| || || |||| ||||| |||||||| || Sbjct 226 ACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGT 285 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | |||||| ||||| ||||| | ||| ||||| || || |||||||| Sbjct 286 GCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACC 345 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||||| ||| || || |||||||| || | || || || | Sbjct 346 TTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAG 405 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 406 AGTGATGGTCTTGCCGGT 423 Score = 105 bits (116), Expect = 2e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| ||||| || || || |||||||| ||||||||||| ||||| || || ||| Sbjct 3 CCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGCGGGATGCCCTCC 62 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || ||||||||||| ||| || || || ||||| |||| || || |||| ||| Sbjct 63 TTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGGACTCAACCTCTAGGGTG 122 Query 225676 ATCGTCTTGCCCGTCAAA 225693 || || ||||| || ||| Sbjct 123 ATGGTTTTGCCAGTTAAA 140 >seq12084 Length=2187 Score = 136 bits (150), Expect = 9e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| |||||||| || |||| ||||| |||| ||| || | |||||| Sbjct 1754 AGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCT 1813 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||| || || ||||| || || || || ||||||||||||||| Sbjct 1814 TCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTTGTCT 1873 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || || || ||||||||||| || ||| || || | |||||||| Sbjct 1874 TGAAT-TTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGATCGT 1932 Query 225681 CTTGCCCGT 225689 |||||| || Sbjct 1933 CTTGCCTGT 1941 Score = 123 bits (136), Expect = 6e-23 Identities = 104/128 (81%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| |||||||| || ||||||| ||||||||||||| ||||| |||||| Sbjct 2050 AGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCCAGAGTTCGACCATCT 2109 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || || ||||| | || ||||| || || || || |||||||||||| Sbjct 2110 TCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCT 2169 Query 225622 TGGATCTT 225629 |||||||| Sbjct 2170 TGGATCTT 2177 >seq4594 Length=2528 Score = 125 bits (138), Expect = 2e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || ||||| || ||||| | ||||||| ||||||||||| ||||| || || ||| Sbjct 1046 TGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGCCAAAGTTCGACCATCCTCAAGTTGC 1105 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| || || ||||| || || || || |||||||| ||||||||||| Sbjct 1106 TTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTTATCTTGGATCTTG 1165 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || || || ||||| || | ||| || || || ||||| || ||||| || Sbjct 1166 GCCTTGACGTTGTCAATCGTGTCCGATGATTCGACCTCCAAAGTGATGGTTTTGCCAGTT 1225 Query 225691 AA 225692 || Sbjct 1226 AA 1227 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || || || || || || |||||||||| ||||| || || | ||| Sbjct 2187 ACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGAGT 2246 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || || ||||| || || || || | ||||| ||||| || |||||||| Sbjct 2247 GCAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACC 2306 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| ||| || || |||||||| |||| || || || || Sbjct 2307 TTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAA 2366 Query 225672 CGTGATCGTCTTGCCCGTCAA 225692 ||||||| ||||| ||||| Sbjct 2367 GATGATCGTTTTGCCAGTCAA 2387 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || |||| | |||| ||||||||||| ||| || | |||||| Sbjct 740 AGAACCAAGTGAAGGGTTGATTTCTCCTGGATATTGTAATCGGACAAGGTACGACCATCT 799 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||| || || ||||| || || || || ||||| ||||||||| Sbjct 800 TCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGTGGGATACCCTCCTTGTCT 859 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || ||||| ||||| | ||| || || | ||||||||| Sbjct 860 TGGATTTTCGCCTTGACGTTATCGATAGTGTCACTAGATTCAACTTCGAGGGTGATCGTC 919 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 920 TTGCCTGT 927 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| | ||| || || || || || || | |||||||| || | ||| Sbjct 1893 CGAAGACGGAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTT 1952 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || || ||||| || || |||||||| || ||||| || || ||||| || Sbjct 1953 CGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCC 2012 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||||||||| ||| ||| |||||||| || |||| || || || | Sbjct 2013 TCCTTATCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGGAGGACTCGACTTCAAGG 2072 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 2073 GTGATGGTCTTTCCTGT 2089 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||||| ||||| || || |||| ||||| ||||| | || | || ||| Sbjct 1324 AGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCT 1383 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || || ||||| || ||||||||||| || ||||| || ||||||||| Sbjct 1384 TCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCT 1443 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || || || || || | || || || || ||||| ||| Sbjct 1444 TGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTGATGGTC 1503 Query 225682 TTGCCCGT 225689 || || || Sbjct 1504 TTTCCTGT 1511 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || ||||| || | ||||| ||||| | || | || || || || || Sbjct 1625 TGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCGTCCTCCAGTTGT 1684 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| | |||||||| || | || || |||||||||||||||||||| Sbjct 1685 TTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTCTTGGATCTTG 1744 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| || || ||||| || | |||||| || | ||||||||||| || || Sbjct 1745 GCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGAGTGATCGTCTTACCGGT 1803 >seq12086 Length=376 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || || || || || || |||||||||| ||||| || || | || Sbjct 32 ACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGT 91 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || || ||||| || || || || | ||||| ||||| || || ||||| Sbjct 92 GCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGGATACC 151 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| ||| || || |||||||| |||| || || || || Sbjct 152 TTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCCAA 211 Query 225672 CGTGATCGTCTTGCCCGTCAA 225692 |||||||| ||||| ||||| Sbjct 212 GGTGATCGTTTTGCCGGTCAA 232 >seq20376 Length=879 Score = 100 bits (110), Expect = 7e-16 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||| ||||||||||||||||||||||||||||| || ||||| ||||| | Sbjct 385 ATACTTCTGGATGTCCAAAAAATCAGAATAAATGTTGATAAAGAATTGGATCTCCTCCTC 326 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767 ||| || ||||| || ||||| ||||| | |||||| Sbjct 325 CTGCAGGGTCAAAGAATGATGTATTTAAATTACGATCAGT 286 >seq12085 Length=636 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || || | || || || || ||||| || | ||||| ||||| | || Sbjct 233 CGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTA 292 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| | || || || || ||||| || |||||||| || || || || ||| Sbjct 293 CGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGGATTCCT 352 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||||||||| || || || || ||||| || | |||||| || | Sbjct 353 TCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACTTCCAGA 412 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||||||||| || || Sbjct 413 GTGATCGTCTTACCGGT 429 >seq4595 Length=3296 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| ||||| || || || |||||||| ||||||||||| ||||| || || ||| Sbjct 1 CCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCCGGCGGGATGCCCTCC 60 Query 225616 TTGTCTTGGATCTT 225629 || ||||||||||| Sbjct 61 TTATCTTGGATCTT 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192191877172352