Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq12084 111 4e-19 seq4594 102 2e-16 seq12086 98.7 2e-15 seq12085 98.7 2e-15 seq12087 89.7 1e-12 >seq12084 Length=2187 Score = 111 bits (122), Expect = 4e-19 Identities = 108/137 (79%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || || |||||||| ||||| |||||||||||||||||||| | ||||| Sbjct 2043 GAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCCAGAGTTCG 2102 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| ||||| ||||| | | ||| || |||| | ||||||| Sbjct 2103 ACCATCTTCGAGTTGCTTT--CCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCT 2160 Query 152004 TCCTTTTCTTGAATTTT 152020 ||||| ||||| || || Sbjct 2161 TCCTTGTCTTGGATCTT 2177 Score = 98.7 bits (108), Expect = 2e-15 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || || || || || || ||||||||||| |||| || || | Sbjct 1747 GAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACG 1806 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || |||||||| || || | ||||| || | | ||| ||||| Sbjct 1807 GCCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTC 1866 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGA 152063 ||| ||||||||||| |||||| | || | | ||| ||| | || |||||||| Sbjct 1867 CTTGTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGA--TTCAACTTCAAGG 1924 Query 152064 GTAATAGTTTTGCCCGTGAG 152083 || || || ||||| ||||| Sbjct 1925 GTGATCGTCTTGCCTGTGAG 1944 >seq4594 Length=2528 Score = 102 bits (112), Expect = 2e-16 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | |||||| || ||||| ||||| |||||||||| ||| ||||||| Sbjct 1030 GAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGCCAAAGTTCG 1089 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| || || ||||| || | ||| || |||| | ||||||| Sbjct 1090 ACCATCCTCAAGTTGCTTT--CCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCT 1147 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || ||||| | || | |||| || || || || | | Sbjct 1148 TCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGATGATTCGACCTCCAAA 1207 Query 152064 GTAATAGTTTTGCCCGT 152080 || || |||||||| || Sbjct 1208 GTGATGGTTTTGCCAGT 1224 Score = 102 bits (112), Expect = 2e-16 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| || |||||||| || |||||||||||||||||||| || || | ||| | Sbjct 2190 GAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGAGTGCA 2249 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| ||||| || || | | |||||||| | | || ||| Sbjct 2250 ACCGTCCTCCAGTTGCTTT--CCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCT 2307 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTT-CAAG 152062 ||||| |||||||| || ||||| | || | | |||| || ||| |||| |||| Sbjct 2308 TCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAAG 2367 Query 152063 AGTAATAGTTTTGCCCGT 152080 | | || |||||||| || Sbjct 2368 A-TGATCGTTTTGCCAGT 2384 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| || | |||||| ||||||||||| || |||||||| ||||| | || | Sbjct 1609 GAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACG 1668 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || ||| ||||| ||||| | | || || || | | ||| ||||| Sbjct 1669 GCCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTC 1728 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || ||||||| | || | |||| || || ||||| ||||| Sbjct 1729 CTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGAGT 1788 Query 152066 AATAGTTTTGCCCGTGAG 152083 || || || || ||||| Sbjct 1789 GATCGTCTTACCGGTGAG 1806 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | ||||| |||||||| || || ||||||||||| || | |||| || || Sbjct 1901 GAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTC 1960 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||| |||||||| | ||| || |||| | || || ||||| || Sbjct 1961 CTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTATC 2020 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || |||||| | || | | | || || ||| |||||||| || || || Sbjct 2021 TTGGATCTTGGCCTTGACATTGTCGATGGTATCGGAGGACTCGACTTCAAGGGTGATGGT 2080 Query 152072 TTTGCCCGTGAG 152083 || || || || Sbjct 2081 CTTTCCTGTAAG 2092 >seq12086 Length=376 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| || |||||||| || |||||||||||||||||||| || || | || | Sbjct 35 GAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGTGCG 94 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| ||||| || || | | |||||||| | | ||| ||| Sbjct 95 ACCGTCCTCCAGTTGCTTT--CCGGCAAAAATCAAACGTTGCTGGTCTGGGGGGATACCT 152 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || ||||| | || | | |||| || ||| ||||| | Sbjct 153 TCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCCAAG 212 Query 152064 GTAATAGTTTTGCCCGT 152080 || || |||||||| || Sbjct 213 GTGATCGTTTTGCCGGT 229 >seq12085 Length=636 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| || | |||||| ||||||||||| || |||||||| ||||| | || | Sbjct 236 AGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGA 295 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || ||||| | ||| ||||| ||||| || | || || || | | |||||||||| Sbjct 296 CCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGGATTCCTTCC 355 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || |||||| | || | |||| || || ||||| ||||| Sbjct 356 TTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACTTCCAGAGTG 415 Query 152067 ATAGTTTTGCCCGTGAG 152083 || || || || ||||| Sbjct 416 ATCGTCTTACCGGTGAG 432 >seq12087 Length=1588 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||| | ||| ||||| || ||||||||||| ||||| || || | || ||||| Sbjct 239 ACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCC 298 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || || ||||| | | ||| || || | | || |||||||| ||||| Sbjct 299 AACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTTGTCTTGG 358 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || ||| ||||| | || | | |||| ||| ||| || |||||||| || || ||| Sbjct 359 ATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTG 418 Query 152076 CCCGTGAGA 152084 || || ||| Sbjct 419 CCGGTAAGA 427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153492491829568