Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq12086 178 3e-39 seq4594 176 9e-39 seq12087 161 2e-34 seq12085 159 7e-34 seq12084 149 1e-30 seq4595 87.8 4e-12 >seq12086 Length=376 Score = 178 bits (196), Expect = 3e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||||||| | || |||||||||||||||||||| ||| Sbjct 27 CCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCA 86 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| ||||| || |||||||| ||||||||||| ||||| || Sbjct 87 AGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGG 146 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| ||||||||||||||||| || || ||| | || || ||||| || | |||||| Sbjct 147 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACT 206 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAA 283078 || | |||||||| || || ||||| Sbjct 207 TCCAAGGTGATCGTTTTGCCGGTCAA 232 >seq4594 Length=2528 Score = 176 bits (194), Expect = 9e-39 Identities = 139/167 (83%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| || ||||||||||| ||||| || ||||| ||||| |||||||| ||||||||| Sbjct 1637 TCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCGTCCTCCAGTTGTTTACCGGCAAAG 1696 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || ||||||||||| || || || || ||||||||||||||||| ||||| || || Sbjct 1697 ATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTA 1756 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || || |||||||| | ||| ||||| ||||||||||||||||| || Sbjct 1757 TCAATCGTGTCCGACGATTCCACTTCCAGAGTGATCGTCTTACCGGT 1803 Score = 168 bits (186), Expect = 1e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||||||| | || |||||||||||||||||||| ||| Sbjct 2182 CCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCA 2241 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||| || ||||| ||||| || |||||||| ||||||||||| ||||| ||| Sbjct 2242 AGAGTGCAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGA 2301 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| ||||||||||| ||||| || || ||| | || || ||||| || | |||||| Sbjct 2302 ATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACT 2361 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAA 283078 || | ||||||| || || ||||| Sbjct 2362 TCCAAGATGATCGTTTTGCCAGTCAA 2387 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| ||| | ||| || || |||||||||||||| || Sbjct 1309 CCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCG 1368 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || || || |||||||| ||||||||||| | |||||||||||| ||| Sbjct 1369 AGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGA 1428 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||| || || ||| | || ||||| || || | || ||| Sbjct 1429 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAACT 1488 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || | |||||| ||||| || || Sbjct 1489 TCCAAAGTGATGGTCTTTCCTGT 1511 Score = 147 bits (162), Expect = 5e-30 Identities = 170/223 (76%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 282863 AAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGT-GCTTTCTTTTTGGATGT 282921 ||| | || ||||||||| || || || |||| || | || | ||||| | |||| | Sbjct 715 AAATCATGCACCACCACGGAGACGGAGAACCAAGTGAAGGGTTGATTTCTCCT-GGATAT 773 Query 282922 TGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGT 282980 |||| || | |||| || || ||||| || ||||| || ||||| || || | |||||| Sbjct 774 TGTAATCGGACAAG-GTACGACCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGC 832 Query 282981 TGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCC 283040 || ||| || |||||||||||||||||||| || || || ||| ||||||||||||| Sbjct 833 TGATCAGGTGGGATACCCTCCTTGTCTTGGATTTTCGCCTTGACGTTATCGATAGTGTCA 892 Query 283041 GAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCT 283083 || ||| |||||||| ||||||||||| || || |||||| Sbjct 893 CTAGATTCAACTTCGAGGGTGATCGTCTTGCCTGT--AAGTCT 933 Score = 134 bits (148), Expect = 3e-26 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || |||||||| |||||||| || ||||| ||||| ||||| || ||||||||| Sbjct 1923 TCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCAAAG 1982 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| ||||| || ||||| |||||||| ||||||||||| || || || | Sbjct 1983 ATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTG 2042 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||||| || || || | |||||||| || ||||| ||||| || || Sbjct 2043 TCGATGGTATCGGAGGACTCGACTTCAAGGGTGATGGTCTTTCCTGT 2089 Score = 123 bits (136), Expect = 5e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || || |||| ||| | ||| || ||||| |||||||| | || Sbjct 1022 CCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGCC 1081 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || |||||||| ||||| || || |||||||| | ||| ||||| || || Sbjct 1082 AAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGG 1141 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| ||||||||||| || || ||| | || || |||||||| | |||||| Sbjct 1142 ATTCCTTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGATGATTCGACC 1201 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAA 283078 || | |||||| || || || || || Sbjct 1202 TCCAAAGTGATGGTTTTGCCAGTTAA 1227 >seq12087 Length=1588 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || ||||| || ||| || || |||||||||||||| || Sbjct 220 ACCACCACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGC 279 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||||| || || | || || || ||||||||||| || ||||| ||| || Sbjct 280 CAAGGTGCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGG 339 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||||||||||||||| || ||| | || || ||||| |||| ||||| Sbjct 340 AATACCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGAC 399 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || |||||||| ||||| || || Sbjct 400 CTCAAGAGTGATGGTCTTGCCGGT 423 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282940 GGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCT 282999 ||||||| || || ||||| ||||||||||| | |||||||||||| ||| || |||| Sbjct 1 GGCCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGCGGGATGCCCT 60 Query 283000 CCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAG 283059 |||| ||||||||||| || || ||| | || || |||||||| | || || || || | Sbjct 61 CCTTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGGACTCAACCTCTAGGG 120 Query 283060 TGATCGTCTTACCCGTCAAA 283079 |||| || || || || ||| Sbjct 121 TGATGGTTTTGCCAGTTAAA 140 Score = 102 bits (112), Expect = 2e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 ||||||||||||||||||| || ||||||||||||||||| || || || || ||| Sbjct 681 AGATCAAACGTTGTTGGTCTGGAGGGATACCCTCCTTGTCTTGAATTTTAGCCTTGACGT 740 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | ||||| ||||| || | || |||||||||||||| || ||||| || Sbjct 741 TGTCGATGGTGTCGGACGACTCAACTTCGAGAGTGATGGTTTTACCGGT 789 >seq12085 Length=636 Score = 159 bits (176), Expect = 7e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| ||| | || ||||| || ||||||||||| ||| Sbjct 227 CCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCA 286 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || | |||||| ||||||||||| | ||||||||| || || Sbjct 287 AGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGG 346 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| ||||||||||| ||||| ||| |||| || |||||||| | ||| ||| Sbjct 347 ATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACT 406 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || ||||||||||||||||| || Sbjct 407 TCCAGAGTGATCGTCTTACCGGT 429 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282939 CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCC 282998 || ||||| || ||||| || ||||||||||| ||||| ||||| || || || || Sbjct 1 CGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCT 60 Query 282999 TCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGA 283058 ||||||||||||||||| || || ||| | || ||||| || || | || ||||| | | Sbjct 61 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAA 120 Query 283059 GTGATCGTCTTACCCGT 283075 ||||| ||||| || || Sbjct 121 GTGATGGTCTTTCCTGT 137 >seq12084 Length=2187 Score = 149 bits (164), Expect = 1e-30 Identities = 163/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 282863 AAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTT 282922 ||| | || ||||||||| || || || |||| || | ||| ||| || |||||||| Sbjct 1729 AAATCATGCACCACCACGGAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTT 1788 Query 282923 GTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 |||||| | |||| || |||||||| || ||||| || ||||| || || | |||||| | Sbjct 1789 GTAGTCGGACAAG-GTACGGCCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCT 1847 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 | ||| || ||||| ||||||||||| || || ||||| ||| ||||||| ||||| Sbjct 1848 GATCAGGGGGGATACCTTCCTTGTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCAC 1907 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | ||| ||||| || ||||||||||| || || Sbjct 1908 TGGATTCAACTTCAAGGGTGATCGTCTTGCCTGT 1941 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || || ||||| || | ||| || |||||||||||||| || || Sbjct 2035 CCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCC 2094 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || ||||| || ||||||||||| ||||| ||||| || || Sbjct 2095 AGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGG 2154 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025 || || ||||||||||||||||| || || ||| Sbjct 2155 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACG 2187 >seq4595 Length=3296 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || ||||| ||||||||||| | |||||||||||| ||| || |||||| Sbjct 1 CCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCCGGCGGGATGCCCTCC 60 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTG 283037 || ||||||||||| || || ||| | || || ||| Sbjct 61 TTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTG 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046441360828032