Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008925.1_202017-03-01] 22,208 sequences; 65,184,451 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq12084 143 6e-29 seq12086 136 1e-26 seq4594 136 1e-26 seq12085 131 4e-25 seq2022 86.0 2e-11 >seq12084 Length=2187 Score = 143 bits (158), Expect = 6e-29 Identities = 147/188 (78%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 |||||||| || ||||||||||| || || ||| | ||||||||||| ||||||||| Sbjct 1944 CTCACAGGCAAGACGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACGTCAAA 1885 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 || ||||| ||||| ||||| ||||| || || |||||||| || || |||||||| Sbjct 1884 GCGAAAATTCAAGACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGGC 1825 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACT 178120 || || ||||||||||| | || |||| |||| || ||| |||| || ||||| || || Sbjct 1824 AAGCAACTCGAAGATGGCCGTAC-CTTGTCCGACTACAACATCCAGAAGGAATCCACCCT 1766 Query 178121 GCATCTTG 178128 || |||| Sbjct 1765 CCA-CTTG 1759 Score = 114 bits (126), Expect = 3e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||| ||||||||||||||||| || || || | ||||| |||||||| Sbjct 2177 AAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGGAAAG 2118 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||||||||||| | ||||| |||||||| ||| ||||||| || || || || || Sbjct 2117 CAACTCGAAGATGGTCGAACTCTGGCCGATTACAACATCCAAAAGGAGTCCACTCTTCAC 2058 Query 178125 CTTGTT 178130 || ||| Sbjct 2057 CTGGTT 2052 >seq12086 Length=376 Score = 136 bits (150), Expect = 1e-26 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || |||||||||||| | || || || ||| |||||||| || |||||||| Sbjct 229 ACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGACAACGTCAAGGCG 170 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||| ||||| ||||| || ||||||||||| | || || |||||||| Sbjct 169 AAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAAG 110 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || || || || | || ||||| || || ||| |||||||||| || || || ||| Sbjct 109 CAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCAT 50 Query 178125 CTTGTTTTGAGACTC 178139 || ||| | ||||| Sbjct 49 CTGGTTCTCCGACTC 35 >seq4594 Length=2528 Score = 136 bits (150), Expect = 1e-26 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || |||||||||| | | || || || ||| |||||||| || |||||||| Sbjct 2384 ACTGGCAAAACGATCATCTTGGAAGTCGAGTCCTCTGACACCATTGACAACGTCAAGGCG 2325 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||| ||||| ||||| || || || ||||||||||| | || || |||||||| Sbjct 2324 AAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAAG 2265 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || || || || | |||||||| || || ||| |||||||||| || || || ||| Sbjct 2264 CAACTGGAGGACGGTTGCACTCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCAT 2205 Query 178125 CTTGTTTTGAGACTC 178139 || ||| | ||||| Sbjct 2204 CTGGTTCTCCGACTC 2190 Score = 118 bits (130), Expect = 3e-21 Identities = 143/191 (75%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || ||||| || |||||||||||||| || ||| ||||| ||||| |||||||| Sbjct 930 CTTACAGGCAAGACGATCACCCTCGAAGTTGAATCTAGTGACACTATCGATAACGTCAAG 871 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 || || || ||||| || || ||||| || || |||||||| || || |||||||| Sbjct 870 GCGAAAATCCAAGACAAGGAGGGTATCCCACCTGATCAGCAACGTCTCATTTTCGCCGGC 811 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACT 178120 || || ||||||||||| | || |||| ||||||| || |||| | ||||||| || Sbjct 810 AAGCAACTCGAAGATGGTCGTAC-CTTGTCCGATTACAATATCCAGGAGAAATCAACCCT 752 Query 178121 GCATCTTGTTT 178131 || |||| || Sbjct 751 TCA-CTTGGTT 742 Score = 118 bits (130), Expect = 3e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||||||||| || ||||| | || || || || || || || || |||||||| Sbjct 1514 CTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACGTCAAG 1455 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| || ||||| || || || ||||| ||||| ||||| || ||||| |||||| Sbjct 1454 GCTAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGTCTCATCTTTGCCGGA 1395 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 ||||| || ||||| || | || || ||||| || ||| |||| || || || ||||| Sbjct 1394 AAACAACTTGAAGACGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACACTC 1335 Query 178122 CAT 178124 ||| Sbjct 1334 CAT 1332 Score = 111 bits (122), Expect = 4e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || ||||| ||||| | ||||| ||| || ||||| || || |||||||| Sbjct 1224 ACTGGCAAAACCATCACTTTGGAGGTCGAATCATCGGACACGATTGACAACGTCAAGGCC 1165 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || || || ||||||||||| ||||| || || || || ||||| || ||||| Sbjct 1164 AAGATCCAAGATAAGGAAGGAATCCCACCGGATCAACAGCGTCTAATCTTTGCTGGAAAG 1105 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || || ||||| | ||| | ||| |||| ||| | ||||| || || || || ||| Sbjct 1104 CAACTTGAGGATGGTCGAACTTTGGCCAATTACAACATTCAAAAGGAGTCCACCCTTCAT 1045 Query 178125 CTTGTT 178130 | ||| Sbjct 1044 TTGGTT 1039 >seq12085 Length=636 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || |||||||| || || |||||| || ||||| || || ||||||||| Sbjct 432 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAACGTCAAA 373 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| || || || ||||||||||| || || || ||||| || ||||| ||||| Sbjct 372 GCTAAGATCCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTCTAATCTTTGCCGGT 313 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 ||||| | ||||| || | || |||||||| || ||| | || ||||| || || || Sbjct 312 AAACAATTGGAAGACGGTCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCTT 253 Query 178122 CATCTTGTTTTGAGACT 178138 ||| | ||| | |||| Sbjct 252 CATTTGGTTCTCCGACT 236 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||||||||| || ||||| | || || || || || || || || |||||||| Sbjct 140 CTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACGTCAAG 81 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| || ||||| ||||||||||||||||| || || || | ||||| |||||| Sbjct 80 GCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGGA 21 Query 178062 AAACAGCTCGAAGATGG 178078 || || ||||||||||| Sbjct 20 AAGCAACTCGAAGATGG 4 >seq2022 Length=9689 Score = 86.0 bits (94), Expect = 2e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || || |||||||||||||| ||| | | ||||| ||||| || ||||| Sbjct 534 CTCACCGGTAAGACCATCACCCTCGAGGTCGAATCCGCCGACACGATCGACAATGTCAAG 593 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||||||| || || ||||| ||||| || ||||| || ||| Sbjct 594 ACAAAGATTCAAGAGAAGGAAGGCATCCCCCCAGACCAACAGCGA 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203388690324352