Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11047 82.4 9e-11 >seq11047 Length=52604 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/179 (72%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 54757 CTTC-ATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATT--TGATACGGCTAT 54813 |||| || || | ||| || || || || || |||||||| ||||| |||| || || Sbjct 22178 CTTCGATAACCTGACTGAAGAGCTTCTTAGTCTCTTTGTGAAGATTGCTGATT--GCGAT 22121 Query 54814 TCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGG 54872 || || ||||| | ||||||||||||||| | || || || || || || |||| | Sbjct 22120 CCTGGCAGCTAGGACGGCATAATCCGGATGGCGAGTGGT-CATGTAAGCAGCGGTTTCAG 22062 Query 54873 CTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 54931 ||| || |||||||||| ||||| || || ||||| | | || | |||||| ||| Sbjct 22061 CTGCCAAGTTGTCCAATTCGACCGTGGTGACACCATTGAAAACACCATTGATAACTTTC 22003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593538741168720