Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq13339 96.9 3e-15 seq13338 93.3 4e-14 seq13340 89.7 4e-13 seq5107 86.0 5e-12 >seq13339 Length=377 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||| |||| ||| | || ||||| ||||| ||||| ||||||| Sbjct 25 TTCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCG 84 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | ||||| | |||||||||| || || || ||| |||| | | |||||||| || Sbjct 85 CAAGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGG 144 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| |||||| || || | | | | || || || ||| Sbjct 145 GGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGA 204 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAA 21154 ||||| ||| || || |||||||| || Sbjct 205 CTTCCAAGGTGATCGTTTTGCCGGTCAA 232 >seq13338 Length=675 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| || | ||| | ||||||||||| |||||||| || || || Sbjct 513 CCACCTCGGAGACGGAGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCA 572 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| || |||| || || || ||||| ||| | ||||| | ||| |||||| ||| Sbjct 573 AGAGTTCGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCCGGGGGA 632 Query 21069 ACGCCTTCCTTGTC 21082 | ||||||||||| Sbjct 633 ATACCTTCCTTGTC 646 >seq13340 Length=1591 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||| | |||||||||||||||||| || ||||| ||||| |||| ||| || |||| || Sbjct 240 CACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTC 299 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 || ||| || || ||| | || | || ||| || || ||| | ||||||||||| Sbjct 300 CAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTTGTCTTG 359 Query 21086 GATCTTT 21092 ||||||| Sbjct 360 GATCTTT 366 >seq5107 Length=2524 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| ||||| || | ||| |||| ||| | ||||||||||| || ||||| ||||| | Sbjct 1306 TTCCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGG 1365 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | ||||| | |||| || || ||||| || ||| | || || | || ||||| | Sbjct 1366 CGAGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAG 1425 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||| |||||||| |||||| || || | | | | |||||| | ||| Sbjct 1426 GAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAA 1485 Query 21127 TTTCCACGGTAATGGTCTTGCCGGT 21151 ||||| || |||||||| || || Sbjct 1486 CTTCCAAAGTGATGGTCTTTCCTGT 1510 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| ||| | || | ||| |||| ||| | || ||||| || |||||||| ||||| | Sbjct 1598 TTCCTCCTTGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGG 1657 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | ||||| || |||||||||| ||||| || ||| | || | | || || || || Sbjct 1658 CAAGGGTACGGCCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGG 1717 Query 21067 GCACGCCTTCCTTGTCGGCGATCTT 21091 | | |||||||||||| |||||| Sbjct 1718 GGATGCCTTCCTTGTCTTGGATCTT 1742 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| ||||| || | ||| |||| ||| | |||||||||||||||||||| || | | Sbjct 1019 TTCCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGG 1078 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| ||| | | ||||| || || || || ||| | || || | ||| || ||| | Sbjct 1079 CCAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTG 1138 Query 21067 GCACGCCTTCCTTGTCGGCGATCTT 21091 | | ||||||||||| |||||| Sbjct 1139 GGATTCCTTCCTTGTCTTGGATCTT 1163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422132400708524