Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq13340 114 1e-20 seq5107 113 5e-20 seq13337 111 2e-19 seq13339 107 2e-18 seq20 89.7 5e-13 >seq13340 Length=1591 Score = 114 bits (126), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || ||||| |||||||| | || ||||| | |||||| | | | |||| |||| Sbjct 428 CTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATTGACAACG-TCAA 370 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || ||| || | ||||| || || || ||| | || || || ||| | |||| || || Sbjct 369 GGCAAAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAACAGCGATTGATCTTTGCTGG 310 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 || ||| |||| |||| |||||| | |||||||||||||||||||||| |||| | Sbjct 309 TAAGCAGTTGGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCCACTTT 250 Query 40890 GCATCTAGTGTTGCG 40904 |||||| ||||| || Sbjct 249 GCATCTCGTGTTACG 235 >seq5107 Length=2524 Score = 113 bits (124), Expect = 5e-20 Identities = 137/184 (74%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| || || |||||||| | || || || | |||| | | | |||| |||| Sbjct 1513 CTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACG-TCAA 1455 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| |||||||| || | ||||| ||||| ||||||| || || Sbjct 1454 GGCTAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGTCTCATCTTTGCCGG 1395 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||||| || || |||| ||||||||| |||||||||||||||||||||| |||| || Sbjct 1394 AAAACAACTTGAAGACGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACACT 1335 Query 40890 GCAT 40893 ||| Sbjct 1334 CCAT 1331 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || |||||||| |||| | | || ||||| || | |||| | | | |||| |||||| Sbjct 2383 ACTGGCAAAACGATCATCTTGGAAGTCGAGTCCTCTGACACCATTGACAACG-TCAAGGC 2325 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || |||| ||||| || || || ||| | ||||||||||| | || | || || || Sbjct 2324 GAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAA 2265 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || ||||| |||| |||| || |||||||||||||| || ||| | || || || Sbjct 2264 GCAACTGGAGGACGGTTGCACTCTTGCGGACTACAACATCCAAAAAGAGTCAACCCTTCA 2205 Query 40893 TCTAGT 40898 ||| || Sbjct 2204 TCTGGT 2199 Score = 82.4 bits (90), Expect = 8e-11 Identities = 130/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAA 40769 ||||| || || || ||||| | || || ||| | | |||| | || || | |||| Sbjct 1805 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAATG-TCAA 1747 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | ||||| || ||||||||| | || || ||||| | |||| || || Sbjct 1746 AGCCAAGATCCAAGACAAGGAAGGCATCCCCACAGATCAACAACGTTTAATCTTTGCCGG 1687 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||||| ||||| |||| || ||||| |||||||||||| ||||| ||| | || || Sbjct 1686 TAAACAACTGGAGGACGGCCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCT 1627 Query 40890 GCAT 40893 ||| Sbjct 1626 TCAT 1623 >seq13337 Length=2187 Score = 111 bits (122), Expect = 2e-19 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| ||||| || |||||| | || || ||| ||| |||| | | | |||| |||| Sbjct 1944 CTCACAGGCAAGACGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACG-TCAA 1886 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | ||||||| ||||| || || |||||| | || |||||||| ||||| | ||| || Sbjct 1885 AGCGAAAATTCAAGACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGG 1826 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| || || || || | || ||| | ||||||||||||||||||||| |||| || Sbjct 1825 CAAGCAACTCGAAGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCT 1766 Query 40890 GCA 40892 || Sbjct 1765 CCA 1763 >seq13339 Length=377 Score = 107 bits (118), Expect = 2e-18 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || |||||||| |||||| | || ||||| || |||||| | | | |||| |||||| Sbjct 229 ACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGACAACG-TCAAGGC 171 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| || || |||||| | ||||||||||| | || | || || || Sbjct 170 GAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAA 111 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || ||||| |||| |||||||| |||||||||||||| || ||| | || || || Sbjct 110 GCAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCA 51 Query 40893 TCTAGT 40898 ||| || Sbjct 50 TCTGGT 45 >seq20 Length=7811 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/213 (69%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 116657 GCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGG 116716 ||||| || || || ||||| | |||||| | || ||||| ||||| | | ||||||| Sbjct 2145 GCCGAAGCTTCCTTTTGGACAGCCGAGGAAATCGATCTGTCGAAGGATATGCACGACTGG 2204 Query 116717 GAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 || ||||| | ||||| || |||||||| || || || || || || || Sbjct 2205 GATAATAAGTTGAATGGGGACGAGAAACACTTCATCAAACATGTCCTCGCTTTCTTTGCT 2264 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 ||| ||| || |||||||||||||| || ||||| | || | || || || | Sbjct 2265 GCCTCCGATGGGATCGTCAACGAGAACCTCATCGAGAGGTTTAGTGGAGAAGTTCAAATC 2324 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 || || || || || ||||||||||| || ||| Sbjct 2325 GCTGAAGCTCGATGTTTCTACGGCTTCCAAATC 2357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515060518926640