Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq5107 100 4e-16 seq13337 95.1 2e-14 seq13340 84.2 3e-11 >seq5107 Length=2524 Score = 100 bits (110), Expect = 4e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 124559 ACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAA 124618 ||| |||||||| || || || | || ||||| | | ||| || || ||| | || Sbjct 930 ACTTACAGGCAAGACGATCACCCTCGAAGTTGAATCTAGTGACACTATCGATAACGTCAA 871 Query 124619 ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGG 124678 |||||| ||||| || || ||||| ||||||||||| ||| | || ||||| || || Sbjct 870 GGCGAAAATCCAAGACAAGGAGGGTATCCCACCTGATCAGCAACGTCTCATTTTCGCCGG 811 Query 124679 AAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTT 124738 || ||| | || ||| |||| || || ||||| ||||| || | ||||||| | Sbjct 810 CAAGCAACTCGAAGATGGTCGTACCTTGTCCGATTACAATATCCAGGAGAAATCAACCCT 751 Query 124739 GCATTTGGTTTTACGTTTACGAGGTGGT 124766 || |||||| | ||| | || |||||| Sbjct 750 TCACTTGGTTCTCCGTCTCCGTGGTGGT 723 >seq13337 Length=2187 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 124560 CTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAA 124619 || |||||||| || || || | || ||||| | | ||| || || ||| | ||| Sbjct 1944 CTCACAGGCAAGACGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACGTCAAA 1885 Query 124620 CAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGA 124679 |||||||||||| || |||||||| || |||||||| ||| | || ||||| || || Sbjct 1884 GCGAAAATTCAAGACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGGC 1825 Query 124680 AAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTG 124739 || ||| | || ||| | || || || || || || || || || ||||| || | Sbjct 1824 AAGCAACTCGAAGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTC 1765 Query 124740 CATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||| | ||| | || |||||| Sbjct 1764 CACTTGGTCCTCCGTCTCCGTGGTGGT 1738 >seq13340 Length=1591 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || ||||| || |||||||| || ||||||||||| | | || ||||| || || Sbjct 365 AAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAACAGCGATTGATCTTTGCTGGTAAG 306 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || || || | || || || | || || || || || || || || ||||||||| Sbjct 305 CAGTTGGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCCACTTTGCAT 246 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 | || |||||| | || |||||||| Sbjct 245 CTCGTGTTACGTCTTCGTGGTGGTAT 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755223328995200