Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5107 98.7 9e-16 seq13337 89.7 4e-13 seq13339 82.4 7e-11 >seq5107 Length=2524 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| |||||||||||||||| | || ||| || |||||| Sbjct 1039 ACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGCCAAAGTTCGACCATCCTCA 1098 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || |||||||| |||| |||||||| ||||| || || || || ||||||||| Sbjct 1099 AGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGG 1158 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | ||||||| || | |||||||| | || | ||||| Sbjct 1159 ATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGAT-TCGACCTCCAAAGTGATGGTTTT 1217 Query 118709 GCCGGT 118714 ||| || Sbjct 1218 GCCAGT 1223 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| ||| ||||| || || |||||||| ||| | ||||| || || Sbjct 1326 ACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCA 1385 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || |||||||| || |||||||||| || || || ||||| ||||||||||||||| Sbjct 1386 AGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCT 1442 >seq13337 Length=2187 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| ||||| |||||||||||| || ||| || ||| ||| Sbjct 2053 ACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCCAGAGTTCGACCATCTTCG 2112 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || || ||||| || |||| | |||||| ||||| ||||| || || ||||||||| Sbjct 2113 AGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCT 2169 >seq13339 Length=377 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||||||||| |||||||| || | ||||| ||||| || || ||||| Sbjct 57 GTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGTGCGACCGTCCTCCAGTTGCTTTCCG 116 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | ||| ||||| || || || || || ||||||||| || || || Sbjct 117 GCAAAAATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTCGCCTTG 176 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716 || | || | |||||| | | |||||| || | ||| | |||||||||||||| Sbjct 177 ACGTTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTGATCGTTTTGCCGGTCA 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433700126018188