Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5107 87.8 2e-12 seq13340 86.0 7e-12 >seq5107 Length=2524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| |||| | ||| | |||||||| | ||| |||||||||||| ||||||| || Sbjct 1020 TCCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGC 1079 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || ||| || | || || || ||||| ||||| || || || ||||| || || | || Sbjct 1080 CAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGG 1139 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | |||||||| ||| || |||| ||| | | | ||||| ||||| | Sbjct 1140 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCAATAGTGTCCGATGATTCGA 1198 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTA 43161 | || | |||||||||||||| |||| Sbjct 1199 CCTCCAAAGTGATGGTTTTGCCAGTTA 1225 >seq13340 Length=1591 Score = 86.0 bits (94), Expect = 7e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| ||||| | |||||| ||| |||||| || || ||||| || |||| || || | Sbjct 234 ACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCC 293 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||||||||| || || | |||||| || || | || | | ||||| Sbjct 294 GTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTT 353 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| ||| |||| ||| | | | |||||| || || || || | |||| Sbjct 354 GTCTTGGATCTTTGCCTTGA-CGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGA 412 Query 43147 TGGTTTTGCCCGTTAG 43162 |||| ||||| || || Sbjct 413 TGGTCTTGCCGGTAAG 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571641487326920