Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq11047 86.0 8e-12 >seq11047 Length=52604 Score = 86.0 bits (94), Expect = 8e-12 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 66772 CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGAT 66831 |||| || | | ||| || || || | ||| || || || || || |||||||| |||| Sbjct 22193 CATAAGTGTAAAGATCTTCGATAACCTGACTGAAGAGCTTCTTAGTCTCTTTGTGAAGAT 22134 Query 66832 T--TGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGT 66889 | |||| || || || || |||| | ||||||||||||||| | || || || || Sbjct 22133 TGCTGATT--GCGATCCTGGCAGCTAGGACGGCATAATCCGGATGGCGAGTGGT-CATGT 22077 Query 66890 -GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTC 66948 || || |||| ||||||| |||||||||| ||||| || || ||||| | | | Sbjct 22076 AAGCAGCGGTTTCAGCTGCCAAGTTGTCCAATTCGACCGTGGTGACACCATTGAAAACAC 22017 Query 66949 CTTGGATAACCTTC 66962 | | |||||| ||| Sbjct 22016 CATTGATAACTTTC 22003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657970091004760