Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq5107 100 3e-16 seq13337 87.8 2e-12 >seq5107 Length=2524 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||| | | || | ||| ||||||| ||||| ||||| || |||||||| ||| Sbjct 1600 CCTCCTTGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCA 1659 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| || ||||||||||| ||| |||| | |||||| ||||| | || Sbjct 1660 AGGGTACGGCCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGG 1719 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || ||| | | || | |||||||| | ||| ||| Sbjct 1720 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACT 1779 Query 143138 TCAACAGTCACCGTCTTGCCGGT 143160 || | ||| | |||||| ||||| Sbjct 1780 TCCAGAGTGATCGTCTTACCGGT 1802 >seq13337 Length=2187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||| ||| || || | ||||||||||| || || Sbjct 1769 GTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCTTCGAGTTGCTTGCCG 1828 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || | || |||||||||||||| || || || ||||| ||||| |||||| ||| Sbjct 1829 GCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTTGTCTTGAATTTTCGCTTTG 1888 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 | | || | ||||| ||| ||| ||||||| || | ||||||||| || Sbjct 1889 ACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGATCGTCTTGCCTGT 1941 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||| | ||| | |||| || || || ||||| |||||||||||| | Sbjct 2035 CCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCC 2094 Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | | |||| ||||||||||| || || ||| |||| | ||| || ||||| |||| Sbjct 2095 A--GAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAG 2152 Query 143076 GTATGCCTTCTTTGTC 143091 | || ||||| ||||| Sbjct 2153 GGATTCCTTCCTTGTC 2168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506858245902480