Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq13340 104 2e-17 seq5107 102 7e-17 >seq13340 Length=1591 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || ||||| | |||||||| || ||||| || | ||| || ||| || ||| | Sbjct 235 CGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCG 294 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || || ||||||| |||| || ||||| || ||||||||||| ||| Sbjct 295 TCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTTG 354 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || |||||||||||| | | | ||||| | ||||| |||| |||||| Sbjct 355 TCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATG 414 Query 94973 GTTTTTCCAGTAAGA 94987 || || || |||||| Sbjct 415 GTCTTGCCGGTAAGA 429 >seq5107 Length=2524 Score = 102 bits (112), Expect = 7e-17 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 94754 GCTAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTA 94813 ||| ||| |||| ||| ||| || ||| || | | ||| | |||| || | || Sbjct 2154 GCTTACGTTTTTACAAAGATTTGCATTCCACCACGGAGTCGGAGAACCAGATGAAGGGTT 2213 Query 94814 GATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA---TCCTCCAGCTGTTTTCCG 94870 || || ||||| | ||| || || | || || || | || |||||||| || |||||| Sbjct 2214 GACTCTTTTTGGATGTTGTAGTC-CGCA-AGAGT-GCAACCGTCCTCCAGTTGCTTTCCG 2270 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 |||| || || | |||||| ||||| ||||||||||| ||||| | ||| || |||||| Sbjct 2271 GCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTTCGCCTTG 2330 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||| | | | ||||||| | ||||| || | |||| ||||| ||||| Sbjct 2331 ACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAAGATGATCGTTTTGCCAGT 2383 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||| |||| | || | ||||| || | || || |||||||| | Sbjct 1008 AAAAATCTGCATTCCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAAT 1067 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| |||| | || ||| | || |||||| || || ||||| ||||||||| | Sbjct 1068 GTTGTAATTGGCCAAAGT--TCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGC 1125 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || ||||| || || || ||||| ||||| | || || ||||||||| | | | |||| Sbjct 1126 TGTTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTG 1185 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 || | ||||| || | ||||||||||| ||||| Sbjct 1186 TCCGATGATTCGACCTCCAAAGTGATGGTTTTGCCAGT 1223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448153131914040