Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq10625 125 1e-24 seq11339 118 2e-22 seq21635 87.8 3e-13 seq1572 87.8 3e-13 seq10628 84.2 3e-12 seq22764 80.6 4e-11 >seq10625 Length=8547 Score = 125 bits (138), Expect = 1e-24 Identities = 106/128 (83%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||| | ||||| | || |||||||||||||| |||||||||||||| |||||| | Sbjct 2275 GTCATCGTAAGATCT-TGCGGGATAACATCCAAGGTATCACCAAGCCAGCCATCCGTAGA 2217 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || |||||||| || |||||||| ||| ||||||| || |||||||||||| ||| | | Sbjct 2216 CTTGCTCGTCGAGGAGGAGTCAAACGTATCTCTGGTCTGATCTATGAAGAGACTCGAGGT 2157 Query 16559 GTTTTGAA 16566 || |||| Sbjct 2156 GTACTGAA 2149 >seq11339 Length=22484 Score = 118 bits (130), Expect = 2e-22 Identities = 105/129 (81%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||| | ||||| | ||||| ||||||||||| |||||||| || |||||||||||| Sbjct 14352 GTCATCGTAAGATCT-TGCGAGACAACATCCAAGGTATCACCAAACCGGCTATCCGTCGT 14294 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || |||||||| || |||||||| ||| ||||||| ||| | || ||||| | |||| Sbjct 14293 CTTGCTCGTCGAGGAGGAGTCAAACGTATCTCTGGTTTGATTTACGAAGAAACCCGTGGA 14234 Query 16559 GTTTTGAAG 16567 ||| | ||| Sbjct 14233 GTTCTCAAG 14225 Score = 93.3 bits (102), Expect = 7e-15 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 16563 TGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAAC 16622 || ||||||||||| ||| ||| |||| || | || || ||||||||||| || | Sbjct 14123 TGTAGATCTTCCTCGAGAACGTCATCCGAGACTCGGTCACTTACACCGAGCACGCCAAGC 14064 Query 16623 GTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTT 16682 | ||||| ||||| ||| |||| ||||||| || | |||||||||||||||| | | Sbjct 14063 GCAAGACGGTCACTTCCTTGGACGTCGTCTACGCCCTTAAACGTCAAGGCCGTACCCTCT 14004 Query 16683 ATGGTTTTGGA 16693 | ||||| ||| Sbjct 14003 ACGGTTTCGGA 13993 >seq21635 Length=3591 Score = 87.8 bits (96), Expect = 3e-13 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||| |||||| |||||||||||||| || | | || |||||||| || |||||| Sbjct 2052 GATAACACCCAAGGCATCACCAAGCCAGCCATTTGAAGACTTGCTCGTCGAGGAGGAGTC 1993 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || ||| | ||||| || |||||||||||| Sbjct 1992 AAACGTATTTCTGGTCTGATCTATGAAGAGA 1962 >seq1572 Length=4133 Score = 87.8 bits (96), Expect = 3e-13 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||| | ||| |||||| || ||||||||||| ||||||||||| || || || | Sbjct 773 GTCATCGTAAGAT-TCTTCGTGACAACATCCAAGGTATCACCAAGCCCGCCATTCGAAGA 715 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 ||||||| || || || ||||||||| |||| || | |||| || |||| ||| | | Sbjct 714 TTGGCTCGACGAGGAGGTGTCAAGCGTATCTCCGGCCTTATCTACGAGGAGACTCGAGGT 655 Query 16559 GT 16560 || Sbjct 654 GT 653 >seq10628 Length=11245 Score = 84.2 bits (92), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | || |||||||||||||| |||||||||||||| || | | || |||| | Sbjct 1063 AGATCT-TGCGTGATAACATCCAAGGCATCACCAAGCCAGCCATTCAAAGACTTGCTCAT 1121 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || |||||||| | | | ||||| || |||||||||||| Sbjct 1122 TGAGGAGGAGTCAAACATATTTCTGGTCTGATCTATGAAGAGA 1164 >seq22764 Length=1124 Score = 80.6 bits (88), Expect = 4e-11 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 ||||| |||||||| || |||||||||||||| ||||| || || || || || || ||| Sbjct 190 CGAGACAACATCCAGGGTATCACCAAGCCAGCCATCCGCCGACTCGCCCGACGAGGAGGA 249 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || || || |||| |||||| | || || |||| Sbjct 250 GTTAAACGAATCTCAGGATTGATTTACGAGGAGA 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79052672389827