Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq13337 114 1e-20 seq5107 82.4 7e-11 >seq13337 Length=2187 Score = 114 bits (126), Expect = 1e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 26803 CGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCG 26862 |||||||| | ||| | ||||| | ||||||||||| | |||||| || ||| | Sbjct 1931 CGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACGTCAAAGCGAAAATTCAAG 1872 Query 26863 ACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAG 26922 |||| ||||| || || || ||||| ||| | ||||||| || |||||| |||||||||| Sbjct 1871 ACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGGCAAGCAACTCGAAG 1812 Query 26923 ATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| | | | | |||||| ||||| || || ||||| || |||| ||||||| Sbjct 1811 ATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTCCACTTGGTCCT 1754 >seq5107 Length=2524 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 26803 CGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCG 26862 |||||||| ||||| | ||||| | ||||| ||||| | ||||| || || | Sbjct 916 CGATCACCCTCGAAGTTGAATCTAGTGACACTATCGATAACGTCAAGGCGAAAATCCAAG 857 Query 26863 ACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAG 26922 |||| || || || || || ||||| ||| | ||||||| || |||||| |||||||||| Sbjct 856 ACAAGGAGGGTATCCCACCTGATCAGCAACGTCTCATTTTCGCCGGCAAGCAACTCGAAG 797 Query 26923 ATG 26925 ||| Sbjct 796 ATG 794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478514977964080