Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq11047 107 5e-18 >seq11047 Length=52604 Score = 107 bits (118), Expect = 5e-18 Identities = 246/370 (66%), Gaps = 8/370 (2%) Strand=Plus/Plus Query 364195 AAGTCCAACCAGCAGCACCTTGGTACAAT----TCAGCAGAGCAACCTATGTACCGAGAT 364250 || ||||| ||| || ||||||| || || ||| | |||||| ||||||||||| Sbjct 23472 AAATCCAATCAGAAGAACCTTGGAACCATCAAATCATC----CAACCTCTGTACCGAGAT 23527 Query 364251 TATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 ||| |||||| |||| || ||||| || || ||||| | || ||||| || | || Sbjct 23528 TATCGAATACTCCGCCCCTGACGAAGTCGCAGTTTGTAATTTGGCCTCGATTGCCTTACC 23587 Query 364311 GGCGTTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGC 364370 | | | | ||||| | | ||| ||| | ||| |||| || ||| | | | Sbjct 23588 AACTTATATCGTCGATGGCAAATACGACTTCCACAAACTTCATGAGGTCACCAAGGAAGT 23647 Query 364371 TACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCG 364430 || | |||||| | ||||||||| ||||| || || || || || || | Sbjct 23648 CACCTACAATCTGAATCGAATTATCGACATCAATTACTACCCGATCCCAGAGGCGAGGAA 23707 Query 364431 TTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 || || ||| | ||||| ||||||||| | || ||||| || || ||||||| ||| Sbjct 23708 GTCGAACATGAGACATCGTCCGATTGGTATCGGAGTACAAGGACTTGCTGACGCTTTCCA 23767 Query 364491 GATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGA 364550 || |||||| | |||| || || | | || | || |||| |||||||||| Sbjct 23768 AATCCTCAAGCTACCATTCGAGTCAGCAGCTGCGAAGGAACTGAATACTCAGATCTTTGA 23827 Query 364551 AACAATGTAT 364560 ||| ||||| Sbjct 23828 AACTCTGTAT 23837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302942147967698