Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq13337 96.9 3e-15 seq5107 95.1 1e-14 >seq13337 Length=2187 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 24025 CGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCG 24084 |||| ||| | ||||| || ||| ||||||||||| | |||||| || ||| | Sbjct 1931 CGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACGTCAAAGCGAAAATTCAAG 1872 Query 24085 ACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAG 24144 |||| ||||| || || || ||||| || | || |||| || ||||||||||||||||| Sbjct 1871 ACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGGCAAGCAACTCGAAG 1812 Query 24145 ATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 ||| | | | | | ||| || ||||| || || ||||| || Sbjct 1811 ATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAATCCAC 1769 >seq5107 Length=2524 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 || ||||| | || ||| | ||||||||| || ||| |||||||| | ||||| Sbjct 2088 ACAGGAAAGACCATCACCCTTGAAGTCGAGTCCTCCGATACCATCGACAATGTCAAGGCC 2029 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 ||||| || || || ||||| || || ||||||||| | || || | | ||||||| Sbjct 2028 AAGATCCAAGATAAGGAGGGCATTCCCCCGGATCAACAGCGTCTTATCTTTGCCGGCAAG 1969 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||||| || || | | ||| | | ||||| |||||||| || || ||||| |||| Sbjct 1968 CAACTTGAGGACGGCCGAACCCTTGCTGATTACAACATTCAGAAGGAGTCTACCCTTCAC 1909 Query 24195 TTAGT 24199 ||||| Sbjct 1908 TTAGT 1904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429806895459045