Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq20410 140 2e-28 seq22410 116 2e-21 seq10869 102 5e-17 seq22587 98.7 7e-16 seq5107 95.1 8e-15 seq13338 89.7 3e-13 seq13337 86.0 4e-12 >seq20410 Length=584 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 110 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 51 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 50 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 16 >seq22410 Length=483 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 412 CTCTCTCTTCAAAGTTCTTTTCACCTTTCCCTCACGGTACTTGTGTGCTATCGGTCTCGT 353 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 352 GGTCATATTTAGCCTTA 336 >seq10869 Length=14506 Score = 102 bits (112), Expect = 5e-17 Identities = 84/101 (83%), Gaps = 11/101 (11%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCG------CTAGATAGTAGATAGGGG--GT---AA 25950 ||||| ||| |||||||||| ||||| ||||||||||||||||| || || Sbjct 4747 AAGCCTGTTGTCTTGGCTGTGATTTCGGTTTTGCTAGATAGTAGATAGGGACAGTGAGAA 4806 Query 25951 TCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||| |||||||||||||||||||||||||||| Sbjct 4807 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 4847 >seq22587 Length=273 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| ||||||||||||||||||||| |||||||||||| | Sbjct 149 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTC 90 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||| Sbjct 89 ACCTATATTTAGCCTTA 73 >seq5107 Length=2524 Score = 95.1 bits (104), Expect = 8e-15 Identities = 105/139 (76%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||| | ||| | ||||||||||| ||| |||||||||||| ||||||| Sbjct 1017 CATT-CCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAAT 1075 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | |||| || | || || | ||| ||||| ||||| ||||| || |||||||| | Sbjct 1076 TGGCCAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCG 1135 Query 38206 AGGGGACGCCTTCTTTGTC 38224 |||| ||||| ||||| Sbjct 1136 GTGGGATTCCTTCCTTGTC 1154 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| || ||| || ||||| ||||| || | | ||| |||| || Sbjct 1618 ACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCGTCCTCC 1677 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 | |||||| |||||||| |||| ||||||||||| | ||||| |||||| ||||| Sbjct 1678 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTC 1733 >seq13338 Length=675 Score = 89.7 bits (98), Expect = 3e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| | ||| | || | |||||| ||| |||||| ||||| |||||||||| Sbjct 511 TACCACCTCGGAGACGGAGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAG 570 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || |||| || | ||| || || ||||| || ||||| ||||| || | || Sbjct 571 CAAGAGTTCGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCCGGGG 630 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247 | | ||||| ||||| ||| || ||||||||||| Sbjct 631 GAATACCTTCCTTGTCTTGAATCTTGGCCTTCACATTCT 669 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| || ||| || ||||| ||||| || | | ||| |||| || Sbjct 245 ACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGACCGTCTTCC 304 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 |||||||| |||||||| ||||| ||||||||||| | ||||| ||||| || || Sbjct 305 AATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGGATTCCTTCCTTATC 360 >seq13337 Length=2187 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/139 (74%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||| | ||| | |||| ||||||||| ||||||||| || ||||||| Sbjct 2031 CATT-CCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAAT 2089 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | || | || | || || | ||| ||||||||||| |||| || |||||||| | Sbjct 2090 CGGCCAGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCG 2149 Query 38206 AGGGGACGCCTTCTTTGTC 38224 |||| ||||| ||||| Sbjct 2150 GAGGGATTCCTTCCTTGTC 2168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334846619438009