Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5107 102 7e-17 seq13339 93.3 4e-14 seq13338 93.3 4e-14 >seq5107 Length=2524 Score = 102 bits (112), Expect = 7e-17 Identities = 149/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064 |||| | || |||||| || || || | ||||| ||||||| || || ||||||| Sbjct 942 ATATCTTTACAGACTT--ACAGGCAAGACGATCACCCTCGAAGTTGAATCTAGTGACACT 885 Query 25065 ATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCG 25123 ||||| | || | ||| |||||| ||||| || || || |||||||| || || || Sbjct 884 ATCGA-TAACGTCAAGGCGAAAATCCAAGACAAGGAGGGTATCCCACCTGATCAGCAACG 826 Query 25124 GATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCA 25183 | ||||| |||||||| ||| | ||||||| ||| || || |||||||||||| || Sbjct 825 TCTCATTTTCGCCGGCAAGCAACTCGAAGATGGTCGTACCTTGTCCGATTACAATATCCA 766 Query 25184 AAAAGAATCCACGCTACATTTAGTGCT 25210 | |||| || || || || || || Sbjct 765 GGAGAAATCAACCCTTCACTTGGTTCT 739 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 25020 TTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGA----GTCACT 25075 ||||| || ||| | |||| | ||||| ||||| |||||||| || || |||| Sbjct 2386 TTGACTGGCAAAACGATCATCTTGGAAGTCGAGTCCTCTGACACCATTGACAACGTCA-- 2329 Query 25076 GAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGC 25135 | || || | ||| ||||| ||||| ||||| || ||||| || || | |||||||| Sbjct 2328 -AGGCGAAGATTCAA-GACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGC 2271 Query 25136 CGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCAC 25195 ||| || ||| | || || | | ||||| | | || ||||| || |||||||| || || Sbjct 2270 CGGAAAGCAACTGGAGGACGGTTGCACTCTTGCGGACTACAACATCCAAAAAGAGTCAAC 2211 Query 25196 GCTACATTTAGTGCT 25210 || ||| | || || Sbjct 2210 CCTTCATCTGGTTCT 2196 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/180 (71%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAGCAAAAAATCAC 25090 ||||||| | ||||| ||||| || || || ||||| || || ||| || ||| Sbjct 2078 CCATCACCCTTGAAGTCGAGTCCTCCGATACCATCGA--CAATGTCAAGGCCAAGATCCA 2021 Query 25091 TGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGA 25150 || || || || ||||| || || |||||||| |||| ||||||||||| ||| | || Sbjct 2020 AGATAAGGAGGGCATTCCCCCGGATCAACAGCGTCTTATCTTTGCCGGCAAGCAACTTGA 1961 Query 25151 AGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || | || || | | |||||||| ||||| || || || || || || ||||| || Sbjct 1960 GGACGGCCGAACCCTTGCTGATTACAACATTCAGAAGGAGTCTACCCTTCACTTAGTCCT 1901 >seq13339 Length=377 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 25020 TTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG 25079 |||||||| ||| | ||||| | ||||| ||||| || ||||| || || | ||| Sbjct 232 TTGACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGACAACGTCAAG 173 Query 25080 CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGC 25139 || ||| ||||| ||||| || || || ||||| || || | ||||||||||| Sbjct 172 GCGAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGA 113 Query 25140 AAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTA 25199 || ||| | || || | |||||| | | || ||||| || |||||||| || || || Sbjct 112 AAGCAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTT 53 Query 25200 CATTTAGTGCT 25210 ||| | || || Sbjct 52 CATCTGGTTCT 42 >seq13338 Length=675 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| ||||| || ||||||||||| |||| ||||| ||||| ||| | ||| Sbjct 646 GACAAGGAAGGTATTCCCCCGGACCAACAGCGCCTTATCTTTGCTGGCAAGCAACTCGAA 587 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || | || ||| | | |||||||| ||||| || || ||||| || ||| |||| || Sbjct 586 GACGGCCGAACTCTTGCTGATTACAACATTCAGAAGGAGTCCACCCTTCATCTAGTCCT 528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433197876882785