Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5107 165 2e-35 seq13337 149 1e-30 seq13339 136 7e-27 seq13340 129 1e-24 seq13338 105 1e-17 seq2185 98.7 2e-15 >seq5107 Length=2524 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| || || || | ||||| || || |||||||| || |||||||| || |||| Sbjct 1306 TTCCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGG 1365 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||| || | || ||||| | || || ||||| || ||||| | ||||||||| || | Sbjct 1366 CGAGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAG 1425 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 ||||||| ||||||||||| ||||| ||||||||| || || || || | || || | Sbjct 1426 GAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAA 1485 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||||| |||||||| ||||| |||||| Sbjct 1486 CTTCCAAAGTGATGGTCTTTCCTGTGAGG 1514 Score = 140 bits (154), Expect = 6e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | ||||| || || |||||||| ||||| ||||| |||| || Sbjct 1019 TTCCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGG 1078 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || | ||||| || | ||||| || || || || || | ||||| || |||| Sbjct 1079 CCAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTG 1138 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || |||||||||||||| ||||| ||||||||| || || ||||| | |||||| | Sbjct 1139 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTCGA 1198 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGT 68437 | ||||| ||||||||||| || || Sbjct 1199 CCTCCAAAGTGATGGTTTTGCCAGT 1223 Score = 140 bits (154), Expect = 6e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | |||| || || || ||||||||||||||||| || || | Sbjct 2179 TTCCACCACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCG 2238 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | || || || | ||||| ||||| || || | | ||| ||||| || | Sbjct 2239 CAAGAGTGCAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGG 2298 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| |||||||||||||||||||| ||||||||| || |||||||| | || || | Sbjct 2299 GAATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGA 2358 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGT 68437 |||||||| |||| ||||| || || Sbjct 2359 CTTCCAAGATGATCGTTTTGCCAGT 2383 Score = 123 bits (136), Expect = 5e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || || | | ||||| || |||||||| Sbjct 724 CCACCACGGAGACGGAGAACCAAGTGAAGGGTTGATTTCTCCTGGATATTGTAATCGGAC 783 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | ||||| |||||||| ||||| | ||| || || ||||| Sbjct 784 AAGGTACGACCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGTGGG 843 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| || || ||||||||| ||||| ||||| ||||| ||| Sbjct 844 ATACCCTCCTTGTCTTGGATTTTCGCCTTGACGTTATCGATAGTGTCACTAGATTCAACT 903 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAG 68440 || | |||||| || || || || || Sbjct 904 TCGAGGGTGATCGTCTTGCCTGTAAG 929 Score = 116 bits (128), Expect = 7e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | || || | ||||| || || || |||||||| || ||||| || |||| Sbjct 1598 TTCCTCCTTGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGG 1657 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | || || || | || || ||||| || || | | |||||| || | | Sbjct 1658 CAAGGGTACGGCCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGG 1717 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | ||||||||||||||||| ||||| || ||||| || || ||||| | ||||| | Sbjct 1718 GGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCA 1777 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||| ||||| || || || |||||| Sbjct 1778 CTTCCAGAGTGATCGTCTTACCGGTGAGG 1806 >seq13337 Length=2187 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || ||||| || || |||||||| || ||||| Sbjct 1739 CCACCACGGAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1798 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | ||||| |||||||| ||||| | ||| || || || || Sbjct 1799 AAGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGG 1858 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||||||||| || || |||||| ||||||||||| ||||| ||| Sbjct 1859 ATACCTTCCTTGTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACT 1918 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || | |||||| || || || |||||| Sbjct 1919 TCAAGGGTGATCGTCTTGCCTGTGAGG 1945 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | |||| ||| || |||||||| ||||||||||| ||||||| Sbjct 2033 TTCCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGG 2092 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | |||||||| | ||||| ||||| || || | | ||||| || || | Sbjct 2093 CCAGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAG 2152 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACG 68387 | || |||||||||||||| ||||| ||||||||| Sbjct 2153 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACG 2187 >seq13339 Length=377 Score = 136 bits (150), Expect = 7e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | |||| || || || ||||||||||||||||| || || | Sbjct 25 TTCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCG 84 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | || || || | ||||| ||||| || || | | ||| ||||| || | Sbjct 85 CAAGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGG 144 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || |||||||||||||| ||||| ||||||||| || |||||||| | || || | Sbjct 145 GGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGA 204 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||||||||||| ||||| || || Sbjct 205 CTTCCAAGGTGATCGTTTTGCCGGT 229 >seq13340 Length=1591 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || || || | || | |||||||| || |||||||| || |||| Sbjct 223 CCACCACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 282 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| |||||||| || || || || | || ||||| || || ||| Sbjct 283 AAGGTGCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGA 342 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||| ||||||||||||||| || |||||||| | || || || Sbjct 343 ATACCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACC 402 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAG 68440 || | |||||||| || || || || Sbjct 403 TCAAGAGTGATGGTCTTGCCGGTAAG 428 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| || ||||| || || || | ||||||||| || || ||||| ||| Sbjct 5 CCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGCGGGATGCCCTCC 64 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || ||||| ||||| ||||||||| || || ||||| | || || || || | |||| Sbjct 65 TTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGGACTCAACCTCTAGGGTG 124 Query 68424 ATGGTTTTTCCCGT 68437 |||||||| || || Sbjct 125 ATGGTTTTGCCAGT 138 Score = 89.7 bits (98), Expect = 9e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGT 68398 ||||||||| || || || || |||||||||||||| || ||||||||| |||||||| Sbjct 693 TTGTTGGTCTGGAGGGATACCCTCCTTGTCTTGAATTTTAGCCTTGACGTTGTCGATGGT 752 Query 68399 GTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 ||| | || || ||||| | ||||||||||| || || || Sbjct 753 GTCGGACGACTCAACTTCGAGAGTGATGGTTTTACCGGTAAG 794 >seq13338 Length=675 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||||| ||||| || || | | ||||| || || || || |||||| Sbjct 4 CCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTCC 63 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| ||||||||| || || || || | || || |||||||| ||| Sbjct 64 TTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTG 123 Query 68424 ATGGTTTTTCCCGTGAGG 68441 ||||| ||||| |||||| Sbjct 124 ATGGTCTTTCCTGTGAGG 141 Score = 96.9 bits (106), Expect = 6e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || |||||||| || || ||||| ||||| | || || | || ||||| | ||| Sbjct 537 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCGGCCGTCTTCGAGTTGC 596 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || || | |||||||| || ||||| |||||||||||||||||||| Sbjct 597 TTGCCAGCAAAGATAAGGCGCTGTTGGTCCGGGGGAATACCTTCCTTGTCTTGAATCTTG 656 Query 68379 GCCTTGAC 68386 ||||| || Sbjct 657 GCCTTCAC 664 >seq2185 Length=9687 Score = 98.7 bits (108), Expect = 2e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 |||||||| || || ||||||||||| ||||||||||||| |||||| ||||| ||| Sbjct 635 TGTTGGTCTGGGGGGATGCCTTCCTTCTCTTGAATCTTTGTCTTGACATTGTCGATCGTG 576 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || ||||| || || | ||||||||| || || |||||| Sbjct 575 TCGGCGGATTCGACCTCGAGGGTGATGGTCTTACCGGTGAGG 534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921338551821080