Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq13338 91.5 1e-13 seq22469 89.7 4e-13 seq5107 82.4 6e-11 >seq13338 Length=675 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||| || || || || |||||||| ||| ||||||||||||||||||||| || Sbjct 512 ACCACCTCGGAGACGGAGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGC 571 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | ||| |||| || | ||||||||| ||||| || |||||||| || ||| Sbjct 572 AAGAGTTCGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCC 626 >seq22469 Length=269 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/101 (81%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 115585 || |||||||| |||| || ||| || | |||||||||||||||| ||| |||||| || Sbjct 198 TGGCATGTATTAGCTCCAGTATTTCCGCAGTTATCCAAGTAACTGGGTACGATCTATTGA 139 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||| |||||||||| |||||| | || ||| || ||||| Sbjct 138 ACCATAACTGATATAATGAGCCTTCCGCGGTTTCACCTTAA 98 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/101 (81%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 114388 || |||||||| |||| || ||| || | |||||||||||||||| ||| |||||| || Sbjct 198 TGGCATGTATTAGCTCCAGTATTTCCGCAGTTATCCAAGTAACTGGGTACGATCTATTGA 139 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||| |||||||||| |||||| | || ||| || ||||| Sbjct 138 ACCATAACTGATATAATGAGCCTTCCGCGGTTTCACCTTAA 98 >seq5107 Length=2524 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||| || || || || | ||||| || ||||||||||||||||||||| || Sbjct 1885 ACCACCTCGAAGACGGAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGC 1944 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | ||| |||| || | ||||||||||||||| || || ||||| |||||| Sbjct 1945 AAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCC 1999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396943167000478